Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GU334_RS08045 Genome accession   NZ_CP047628
Coordinates   1659917..1661713 (-) Length   598 a.a.
NCBI ID   WP_096039405.1    Uniprot ID   A0A290Q5U7
Organism   Lactococcus raffinolactis strain Lr_19_14     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654917..1666713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU334_RS08030 (GU334_07995) - 1657458..1657958 (-) 501 WP_061775233.1 LURP-one-related family protein -
  GU334_RS08035 (GU334_08000) - 1658201..1659115 (-) 915 WP_167372333.1 peptidyl-prolyl cis-trans isomerase -
  GU334_RS08040 (GU334_08005) - 1659220..1659924 (-) 705 WP_096039404.1 O-methyltransferase -
  GU334_RS08045 (GU334_08010) pepF 1659917..1661713 (-) 1797 WP_096039405.1 oligoendopeptidase F Regulator
  GU334_RS08050 (GU334_08015) mmuM 1661862..1662779 (-) 918 WP_096039406.1 homocysteine S-methyltransferase -
  GU334_RS08055 (GU334_08020) - 1662757..1664127 (-) 1371 WP_096040497.1 amino acid permease -
  GU334_RS08060 (GU334_08025) coiA 1664320..1665309 (-) 990 WP_061775229.1 competence protein CoiA family protein Machinery gene
  GU334_RS08065 (GU334_08030) - 1665386..1666351 (-) 966 WP_061775228.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68157.89 Da        Isoelectric Point: 4.4867

>NTDB_id=414696 GU334_RS08045 WP_096039405.1 1659917..1661713(-) (pepF) [Lactococcus raffinolactis strain Lr_19_14]
MVKKREAIDEKYKWDLTTIFATDEAFEAELAEVLTALEDARNLAGTLTDSAENLLAVTDTELALMQRVEKLYVYASMKND
QDTTVSLYQEYQAKVTALYAKFSEVFAFYEPEFMTLSQERFAQFVIDQPKLQTYGHFFEQLFDRKAHVLSSAEEALLAGA
SEIFGAGAETFEILDNADIVFPTIRDAQGQDVQLSHGNYISFMESSNREVRKAAYQALYSIYEQYQHTYAKTLQTNVKVH
NFTAKTRHYHSAREAALSTNHIPEAVYDTLVQAVNDHLPLLHRYIQLRSDILKIDDLKMYDVYAPLSTTDYKFTYEEAVV
KTQGTLAIFGPDYLEKVKRSFEENWIDVQENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHEMGHSMHSSFTRES
QPYVYGDYSIFLAEIASTTNENILTETLLHDVEDDETRFAVLNHFLDGFRGTVFRQTQFAEFEHAIHEADAAGTVLTSEF
LNQQYAELNEKYYGLAASDNPEIQYEWARIPHFYYNYYVFQYATGFAAASALADKIVNGTEQDKADYLNYLRAGSSDYPL
DVIAKAGVDMTSADYLTAAFAVFEKRLTELEALVAKHG

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=414696 GU334_RS08045 WP_096039405.1 1659917..1661713(-) (pepF) [Lactococcus raffinolactis strain Lr_19_14]
ATGGTAAAAAAACGTGAAGCAATTGATGAAAAATATAAATGGGATCTGACGACAATTTTTGCAACAGATGAGGCTTTTGA
AGCGGAACTCGCAGAGGTTTTAACTGCACTAGAGGATGCTAGAAACTTAGCTGGTACCCTGACAGATTCTGCAGAAAATT
TATTAGCAGTGACTGATACGGAGTTGGCGCTCATGCAACGGGTAGAAAAGCTCTATGTCTATGCGTCAATGAAAAATGAC
CAGGATACAACGGTTAGTCTTTATCAAGAATATCAAGCAAAAGTAACAGCGCTCTATGCTAAATTTAGTGAAGTTTTTGC
TTTCTATGAACCTGAGTTTATGACTTTGTCGCAAGAAAGGTTTGCGCAGTTTGTCATTGATCAACCTAAATTACAAACTT
ATGGGCACTTCTTTGAGCAGTTGTTTGACAGAAAAGCTCATGTTTTGTCAAGCGCAGAAGAAGCCTTACTAGCTGGTGCG
TCAGAGATTTTCGGTGCAGGTGCTGAAACCTTTGAAATCTTAGATAATGCAGATATCGTCTTTCCAACGATTAGGGATGC
GCAAGGTCAAGACGTGCAGCTGTCACATGGTAACTATATTTCATTCATGGAATCATCGAATCGTGAGGTCAGAAAAGCAG
CCTATCAAGCACTCTATAGCATCTATGAACAATATCAGCATACCTATGCCAAGACGCTACAAACTAACGTCAAAGTCCAT
AACTTCACAGCTAAAACACGCCATTATCACTCAGCACGTGAAGCGGCTTTGTCCACTAACCACATCCCAGAAGCGGTTTA
TGACACTTTAGTTCAAGCGGTCAATGACCACCTGCCTCTGCTTCACCGTTATATCCAACTGCGCTCTGATATCCTGAAAA
TTGATGACCTAAAAATGTATGATGTCTATGCCCCTTTGTCAACGACAGATTATAAATTTACCTATGAAGAGGCAGTCGTT
AAAACTCAAGGCACACTTGCGATTTTCGGCCCAGATTATCTGGAAAAAGTTAAACGCAGCTTTGAAGAAAACTGGATTGA
TGTTCAGGAGAATAAAGGCAAGCGCTCAGGTGCCTATTCAGGCGGTTCGTATGATACCAACGCCTTCATGCTTCTCAACT
GGCAGGATACGCTGGATAATCTCTTTACTTTGGTGCACGAGATGGGCCACAGCATGCACAGTAGCTTTACCCGCGAAAGC
CAGCCTTATGTCTACGGTGACTACAGCATCTTCCTCGCTGAAATAGCTTCGACAACTAATGAAAATATCCTCACAGAAAC
CTTGCTCCATGATGTTGAGGATGATGAGACGAGATTCGCGGTGCTCAACCACTTCTTGGATGGCTTTAGAGGCACTGTCT
TTAGACAAACGCAGTTTGCTGAGTTCGAGCATGCCATTCATGAGGCAGATGCTGCAGGAACCGTCTTAACCAGCGAGTTC
TTAAACCAACAATATGCCGAGTTAAATGAAAAATATTACGGCCTAGCTGCAAGTGATAACCCAGAAATCCAGTACGAATG
GGCTAGAATCCCACATTTCTACTACAATTACTATGTTTTCCAATATGCGACAGGTTTTGCAGCAGCATCTGCCTTGGCAG
ATAAAATCGTGAATGGAACTGAGCAAGATAAGGCAGACTATCTGAATTACTTGCGAGCTGGTTCGTCAGACTATCCGCTA
GATGTCATTGCCAAAGCGGGTGTTGATATGACGTCAGCTGATTATCTTACTGCTGCTTTTGCAGTTTTTGAAAAACGCTT
GACAGAATTAGAAGCATTGGTGGCGAAACATGGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290Q5U7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.107

99.666

0.659

Multiple sequence alignment