Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GU334_RS01740 Genome accession   NZ_CP047628
Coordinates   357781..359646 (+) Length   621 a.a.
NCBI ID   WP_061773762.1    Uniprot ID   A0AAE6YKC1
Organism   Lactococcus raffinolactis strain Lr_19_14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 352781..364646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU334_RS01720 (GU334_01720) - 352871..353899 (+) 1029 WP_167841040.1 sugar ABC transporter substrate-binding protein -
  GU334_RS01725 (GU334_01725) - 354142..355332 (+) 1191 WP_167841041.1 iron-containing alcohol dehydrogenase -
  GU334_RS01730 (GU334_01730) - 355483..355938 (+) 456 WP_096039973.1 MarR family transcriptional regulator -
  GU334_RS01735 (GU334_01735) rcrP 356009..357781 (+) 1773 WP_167841042.1 ABC transporter ATP-binding protein Regulator
  GU334_RS01740 (GU334_01740) rcrQ 357781..359646 (+) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  GU334_RS01745 (GU334_01745) - 359782..360528 (+) 747 WP_157738514.1 tyrosine-protein phosphatase -
  GU334_RS01750 (GU334_01750) - 360802..361209 (+) 408 WP_167839715.1 hypothetical protein -
  GU334_RS01755 (GU334_01755) - 361274..361630 (+) 357 WP_061773765.1 hypothetical protein -
  GU334_RS01760 (GU334_01760) - 361656..362021 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 67574.84 Da        Isoelectric Point: 5.7384

>NTDB_id=414676 GU334_RS01740 WP_061773762.1 357781..359646(+) (rcrQ) [Lactococcus raffinolactis strain Lr_19_14]
MPTTKNTPKKSNGGGFGPGRGLGRGGEKPKDVKKALGDLAKYVKPWYPAILVAAIAACGGAYLTIIGPDRLSEITNKIMA
GLRASFIPKGMPGHGDIDMKAITAIGVTLIAFYLGSALLSYTQGFIMATVTQRTSKKLRQDISTKINKLPLRYFDSHPYG
DTLSRVTNDVDAISQALNQSVGSLVSALTLFFGTIIMMFKTNVEMSLTAIATTAIGFGLMMLIMTKSQRFFNAQQNGLGE
VNGFVEEVYTGHNIVRVSNADKSKQDEFDEINERLYNSVWKSQFLSGLMMPLMQFIGNFGYGAVCLVGAILAIDGKIEFG
VIVAFMIYIRLFTQPLTQIAQAVTSMQSAGAASERIFTFLAEPELEDETGKATTLVNPKGAVEFKNVHFGYNADRVIIND
FSAKAEPGQKIAIVGPTGAGKSTMVNLLMRFYDIDSGQIIIDGTPIKEVTREAVHDQFSMVLQDTWLFEGTVKENLIYNQ
CDITDEQVVAAAKAVGVDHFINTLPNGYDSVLKDADELSVGERQLLTIARALLKNAPMLILDEATSSVDTRTEELIQKAM
DKLMEGRTSFVIAHRLSTIKNADLILVMKDGDIIESGNHEALLAQGGFYADLYNSQFESVA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=414676 GU334_RS01740 WP_061773762.1 357781..359646(+) (rcrQ) [Lactococcus raffinolactis strain Lr_19_14]
ATGCCGACAACAAAAAATACACCTAAAAAATCTAATGGCGGTGGCTTTGGACCAGGTCGTGGCTTAGGTCGCGGAGGTGA
AAAACCCAAAGACGTCAAAAAAGCCTTGGGCGACTTAGCGAAATATGTCAAACCTTGGTATCCGGCGATTCTTGTCGCAG
CCATCGCTGCCTGTGGTGGTGCTTATCTGACCATTATCGGTCCTGATCGCCTATCTGAAATTACTAATAAAATCATGGCT
GGTTTGAGAGCCAGCTTCATCCCCAAAGGCATGCCAGGTCATGGCGACATTGATATGAAAGCCATTACGGCGATTGGTGT
GACTTTGATTGCCTTCTACTTGGGTTCAGCGCTTTTGAGTTACACCCAAGGTTTCATCATGGCGACTGTAACCCAACGGA
CATCTAAGAAACTACGTCAAGATATTTCGACGAAAATTAACAAATTACCTTTGCGCTACTTTGATAGTCATCCTTATGGC
GATACTTTGTCGCGCGTGACAAATGACGTGGATGCGATCAGCCAAGCCCTTAACCAATCCGTTGGGAGTTTGGTTTCAGC
CTTGACGCTCTTCTTTGGCACGATCATCATGATGTTTAAAACCAACGTTGAAATGAGTCTGACTGCTATTGCCACAACGG
CGATCGGCTTTGGCTTAATGATGCTCATCATGACTAAGTCACAAAGATTCTTTAACGCCCAACAAAACGGCCTCGGCGAG
GTTAATGGTTTTGTGGAAGAAGTTTACACGGGTCATAATATCGTGAGAGTGTCCAATGCGGACAAGTCTAAACAAGATGA
GTTCGATGAAATCAATGAACGCCTTTATAACTCAGTTTGGAAATCTCAATTTCTGTCAGGTTTGATGATGCCACTCATGC
AATTCATCGGTAACTTTGGTTACGGTGCTGTCTGTTTGGTTGGGGCGATTTTAGCCATCGATGGTAAAATCGAGTTTGGC
GTGATCGTAGCCTTCATGATTTATATTCGTTTGTTCACCCAACCCTTGACACAAATCGCCCAAGCGGTGACCTCAATGCA
ATCAGCAGGCGCAGCTTCTGAGCGGATTTTCACATTCCTTGCGGAACCTGAATTAGAAGACGAAACGGGTAAGGCAACGA
CATTGGTCAACCCTAAAGGGGCTGTTGAATTTAAAAACGTTCATTTCGGCTATAACGCTGATCGTGTCATCATCAATGAC
TTCTCAGCCAAAGCTGAACCTGGTCAGAAGATTGCCATCGTTGGGCCTACGGGCGCTGGTAAATCAACCATGGTCAACTT
GCTCATGCGTTTCTACGATATTGATTCTGGTCAAATCATCATTGATGGGACACCGATTAAAGAGGTGACGCGTGAAGCGG
TCCACGATCAGTTTTCAATGGTCTTACAAGACACGTGGTTGTTTGAAGGGACAGTGAAAGAAAACTTGATCTATAATCAA
TGTGATATCACGGATGAACAGGTTGTTGCTGCTGCTAAGGCAGTTGGTGTCGATCATTTTATCAATACCTTACCAAATGG
CTATGACTCAGTCTTGAAAGACGCTGATGAATTATCAGTTGGTGAACGTCAGCTCTTAACCATTGCCCGTGCGCTCTTGA
AAAATGCACCAATGTTGATTCTTGATGAAGCGACATCATCAGTAGATACGCGGACTGAAGAATTGATCCAAAAAGCCATG
GATAAACTCATGGAAGGTCGGACAAGTTTTGTCATTGCCCACAGACTGTCTACCATCAAAAATGCTGACTTGATTCTCGT
CATGAAAGACGGCGATATCATCGAAAGTGGCAACCACGAAGCCTTGCTTGCACAAGGTGGCTTCTATGCTGATTTGTACA
ATTCACAGTTTGAAAGCGTGGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(399-546)

ABC transporter transmembrane region (ABC_membrane)

(82-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.508

95.008

0.575

Multiple sequence alignment