Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GU334_RS01735 Genome accession   NZ_CP047628
Coordinates   356009..357781 (+) Length   590 a.a.
NCBI ID   WP_167841042.1    Uniprot ID   A0AAE6YJY5
Organism   Lactococcus raffinolactis strain Lr_19_14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 351009..362781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU334_RS01715 (GU334_01715) - 351852..352820 (+) 969 WP_167841039.1 ABC transporter permease -
  GU334_RS01720 (GU334_01720) - 352871..353899 (+) 1029 WP_167841040.1 sugar ABC transporter substrate-binding protein -
  GU334_RS01725 (GU334_01725) - 354142..355332 (+) 1191 WP_167841041.1 iron-containing alcohol dehydrogenase -
  GU334_RS01730 (GU334_01730) - 355483..355938 (+) 456 WP_096039973.1 MarR family transcriptional regulator -
  GU334_RS01735 (GU334_01735) rcrP 356009..357781 (+) 1773 WP_167841042.1 ABC transporter ATP-binding protein Regulator
  GU334_RS01740 (GU334_01740) rcrQ 357781..359646 (+) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  GU334_RS01745 (GU334_01745) - 359782..360528 (+) 747 WP_157738514.1 tyrosine-protein phosphatase -
  GU334_RS01750 (GU334_01750) - 360802..361209 (+) 408 WP_167839715.1 hypothetical protein -
  GU334_RS01755 (GU334_01755) - 361274..361630 (+) 357 WP_061773765.1 hypothetical protein -
  GU334_RS01760 (GU334_01760) - 361656..362021 (+) 366 WP_096039977.1 hypothetical protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64889.45 Da        Isoelectric Point: 9.0892

>NTDB_id=414675 GU334_RS01735 WP_167841042.1 356009..357781(+) (rcrP) [Lactococcus raffinolactis strain Lr_19_14]
MFKILKKITGKELRYVGISLIFIVIQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDEGRWMVLCAFGSLVAAVIVGFFAA
KVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMIVAMGLQLSIKAPITAVWAIMKIANKSWEWTTA
LGAAVLFLLVMISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIRVVRAYNAQKYQTDKFEKANDDITSTNLFIQRAMAF
MMPMMSLVSSGLSVAVYLIGATIIKAASVGTPANSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMFPRANVSAGRINE
VIDTASSIKNGTKDGSAAKEVGTVEFKNVYFQYADASEHVLEGVSFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKEYTEEALHDKMGFIPQKPVMFNGTIRSNLAFGTNAHGDMSDEDLMAAARIAQAEEFILKNPEGLNAEVSQ
GGLNLSGGQKQRLAIARAIARKPEILVFDDSFSALDYKTDRVLRDTLKRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGRGTHDELMASNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=414675 GU334_RS01735 WP_167841042.1 356009..357781(+) (rcrP) [Lactococcus raffinolactis strain Lr_19_14]
ATGTTTAAAATCTTAAAAAAAATCACTGGAAAAGAGCTCAGATACGTCGGTATCAGCCTGATTTTCATTGTCATCCAGGT
GTATTTAGACCTTAAATTACCGGATTACATGAGCAAAGTGACCAAATTGATCCAAGAAAAAGGCACAACCGTGTCGCAAA
TCTTTGATGAAGGTCGCTGGATGGTCCTCTGTGCCTTTGGCTCACTCGTCGCCGCAGTCATTGTTGGCTTCTTTGCTGCC
AAGGTAGCCGCTGGCTTATCACGGACGCTGCGTCATGATGTCTACCATCAAGTCTCAGAGTATTCAATGGCTGAAATCAA
CCAGTTTTCAACTGCCAGCCTGATTACCCGTTCGACCAACGACATTACTCAAGTCCAAATGATCGTGGCTATGGGGCTAC
AACTCAGTATCAAAGCACCGATTACTGCCGTTTGGGCTATCATGAAAATTGCCAACAAATCATGGGAATGGACGACTGCT
TTAGGTGCTGCTGTTCTCTTCCTTCTCGTCATGATCAGTATTATCGTGACGCTTGCCATGCCACGCTTCAAGATTATCCA
AAAATTAACGGATAAACTAAATTCCGTGACCCGTGAAAACCTGACTGGGATTCGTGTGGTCCGTGCTTATAACGCTCAAA
AATATCAAACTGATAAATTTGAAAAAGCCAACGACGATATTACGTCAACCAACCTCTTCATTCAACGCGCAATGGCCTTC
ATGATGCCCATGATGTCTCTTGTGTCATCTGGCCTGTCAGTTGCCGTTTACTTGATTGGTGCGACCATTATTAAAGCTGC
AAGCGTTGGGACACCTGCTAATTCACCTCGGATCAATCTCTTTTCAGACATGGTCGTGTTCACGTCTTATGGAATGCAAG
TTGTGATGGCCTTTATGATGTTGACCATGATTTTCATCATGTTCCCGCGTGCCAATGTCTCTGCTGGTCGGATTAATGAA
GTCATCGATACCGCCTCAAGCATTAAAAACGGGACAAAAGATGGTTCAGCAGCTAAAGAAGTTGGGACTGTCGAGTTTAA
GAACGTCTATTTCCAATACGCTGATGCCTCTGAACACGTTCTTGAAGGTGTTTCTTTCAAGGCCAATAAAGGCGAAACGG
TTGCCTTCATCGGCTCAACCGGTTCTGGTAAATCAACATTAATCAACCTCATCCCGCGTTACTATGATGTGACAGCCGGT
CAAGTCTTGGTTGATGGCGTCAATGTTAAGGAATATACAGAAGAAGCCTTGCACGATAAAATGGGCTTCATCCCGCAAAA
ACCAGTGATGTTTAACGGAACGATTCGGTCAAACTTGGCCTTTGGGACTAATGCTCATGGTGACATGAGTGATGAAGACT
TAATGGCAGCTGCACGGATTGCCCAAGCTGAAGAATTTATACTGAAAAACCCTGAAGGCTTAAACGCTGAAGTATCTCAG
GGTGGTCTTAACCTGTCCGGTGGTCAAAAGCAACGGCTAGCGATTGCTCGTGCCATTGCCCGCAAGCCTGAAATTCTCGT
CTTTGATGACAGTTTTTCAGCTTTGGACTATAAGACTGACCGTGTCTTACGCGATACCTTGAAACGTGAAACAGCAGAAA
CGACGAAACTGATTGTTGCCCAACGGATTGGCACGATTATCGATGCCGATCAAATTATTGTTTTGGATAAAGGGAAAGTC
GTGGGTCGTGGGACACATGATGAGTTGATGGCTAGCAATGAAGTCTATCAAGAAATCGCCTATTCACAACTGTCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-511)

ABC transporter transmembrane region (ABC_membrane)

(17-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.184

100

0.559

Multiple sequence alignment