Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GU334_RS00845 Genome accession   NZ_CP047628
Coordinates   158319..159377 (+) Length   352 a.a.
NCBI ID   WP_167840947.1    Uniprot ID   A0AAE7CRH5
Organism   Lactococcus raffinolactis strain Lr_19_14     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 153319..164377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU334_RS00830 (GU334_00830) rsmD 156863..157429 (+) 567 WP_167840944.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GU334_RS00835 (GU334_00835) - 157392..157853 (+) 462 WP_167840945.1 ASCH domain-containing protein -
  GU334_RS00840 (GU334_00840) coaD 157850..158332 (+) 483 WP_167840946.1 pantetheine-phosphate adenylyltransferase -
  GU334_RS00845 (GU334_00845) sepM 158319..159377 (+) 1059 WP_167840947.1 SepM family pheromone-processing serine protease Regulator
  GU334_RS00850 (GU334_00850) - 159661..160893 (+) 1233 WP_167840948.1 GHKL domain-containing protein -
  GU334_RS00855 (GU334_00855) - 161200..161913 (+) 714 WP_061773609.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38011.80 Da        Isoelectric Point: 9.1025

>NTDB_id=414671 GU334_RS00845 WP_167840947.1 158319..159377(+) (sepM) [Lactococcus raffinolactis strain Lr_19_14]
MIKSKKSFIKKRWAVASLIGILVFLGVLLPLPYYVEMPGTTENVGEMIKVDQASLTQKSEEGSLNLTTVSMMRATGASLI
YAALTDFTDVYSKKDMMGNQTDADYNRMNAFYMASAQNAATYEAFKLAGKPFELDYKGVYVLDVLKKSTFKDVLHIADTV
TGVNGQSFKSSEELMTYIKSQKIGAKISVQYTDEAGKAKSADGKTIKIADGKAGIGITLVDHTEVKSTPSVTIDAGAIGG
PSAGMMFTLEIYSQLTGQDLTNGREIAGTGTIEKDGKIGRIGGIDKKIATASRNGAQIFLAPDDEITPEMKKVEPGVKSN
YQEVLAAAKKLNTKMKIVPVKTVQDAIDYLKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=414671 GU334_RS00845 WP_167840947.1 158319..159377(+) (sepM) [Lactococcus raffinolactis strain Lr_19_14]
TTGATCAAAAGTAAAAAGTCATTTATAAAAAAACGCTGGGCTGTTGCTAGTCTTATTGGTATCCTAGTCTTTCTTGGTGT
TTTGCTCCCCCTACCCTACTATGTTGAGATGCCTGGCACGACTGAAAATGTTGGTGAGATGATTAAGGTCGATCAAGCAT
CATTGACCCAAAAATCAGAAGAAGGGTCTTTGAATTTGACGACTGTTTCGATGATGCGGGCAACGGGTGCGAGTTTGATT
TATGCTGCATTGACGGATTTTACCGATGTTTACAGTAAAAAAGACATGATGGGTAACCAGACGGATGCTGATTACAATCG
GATGAATGCTTTTTACATGGCAAGTGCTCAGAATGCTGCAACCTACGAGGCATTTAAGTTGGCGGGGAAACCCTTTGAGT
TAGATTATAAAGGTGTTTATGTCCTGGATGTGCTGAAGAAATCGACGTTTAAAGATGTTTTACATATCGCGGATACAGTG
ACAGGTGTCAATGGGCAAAGTTTTAAATCATCTGAGGAGCTGATGACCTACATCAAGTCCCAAAAGATTGGGGCTAAGAT
TTCAGTTCAGTATACAGATGAAGCGGGTAAGGCAAAATCGGCAGACGGCAAAACGATTAAGATCGCAGATGGTAAAGCTG
GAATTGGGATTACCTTGGTGGATCATACGGAAGTTAAGAGTACACCATCTGTGACAATTGATGCGGGGGCGATTGGTGGC
CCATCTGCAGGGATGATGTTTACGCTTGAAATCTATTCCCAATTGACGGGCCAAGATTTAACGAACGGTAGAGAGATTGC
GGGTACAGGTACGATTGAAAAAGATGGGAAAATCGGTCGAATTGGCGGTATTGATAAAAAAATCGCCACTGCCAGTCGCA
ATGGTGCTCAAATTTTTCTAGCGCCTGATGATGAGATAACCCCAGAGATGAAGAAAGTCGAGCCTGGTGTTAAGTCAAAC
TATCAAGAAGTATTGGCTGCAGCTAAAAAACTGAATACAAAGATGAAAATTGTCCCAGTGAAAACAGTGCAGGATGCAAT
TGACTATTTGAAAGAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-192)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

50.142

99.716

0.5

Multiple sequence alignment