Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   GU336_RS12605 Genome accession   NZ_CP047616
Coordinates   2542608..2543369 (+) Length   253 a.a.
NCBI ID   WP_096039784.1    Uniprot ID   A0A290PXZ6
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2537608..2548369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS12580 (GU336_12560) - 2537992..2538942 (+) 951 WP_068164079.1 IS30 family transposase -
  GU336_RS12585 (GU336_12565) - 2539034..2539780 (+) 747 WP_061774546.1 DUF975 family protein -
  GU336_RS12590 (GU336_12570) - 2539821..2540366 (-) 546 WP_061774547.1 DNA-3-methyladenine glycosylase I -
  GU336_RS12595 (GU336_12575) - 2540514..2541470 (+) 957 WP_096039782.1 rhodanese-related sulfurtransferase -
  GU336_RS12600 (GU336_12580) - 2541510..2542550 (-) 1041 WP_138492300.1 glycerate kinase -
  GU336_RS12605 (GU336_12585) spo0J 2542608..2543369 (+) 762 WP_096039784.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28654.30 Da        Isoelectric Point: 7.2094

>NTDB_id=414669 GU336_RS12605 WP_096039784.1 2542608..2543369(+) (spo0J) [Lactococcus raffinolactis strain Lr_19_5]
METIQLLPISDIVKNPYQPRIVFDDKKLQELSDSIKENGVLQPIIVRKSPIIGYEILAGERRFRASQLAGLTEIPAIIRQ
LTDDEMMTLAILENLQRDDLTLLDEARSLQNLVTKQGLTHTQIAEKLGKSRPYVTNAIRILNLPDPILEMIEVQKISQGH
ARLLLGLKTPQEQLAWAQRIDQEQLSVRALEKRLTKQTNEPNIQSSKDVFIKSAETDIAKALGQAVTIKPNKIEIAYNTL
EDLNRLLLILTQK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=414669 GU336_RS12605 WP_096039784.1 2542608..2543369(+) (spo0J) [Lactococcus raffinolactis strain Lr_19_5]
ATGGAAACTATTCAATTGCTACCAATATCAGATATCGTCAAAAATCCCTATCAACCTCGGATCGTCTTTGACGACAAAAA
GTTACAAGAACTTAGCGATTCAATTAAAGAAAATGGTGTCTTACAACCAATCATCGTCAGAAAATCACCAATTATTGGGT
ACGAAATTTTAGCTGGGGAACGCCGTTTTAGAGCTTCTCAATTAGCTGGCCTCACTGAAATTCCGGCTATTATCCGCCAA
TTAACAGATGACGAGATGATGACACTAGCGATTTTGGAAAATTTACAACGGGATGATTTGACCCTTCTAGATGAAGCGCG
GAGTCTTCAAAATCTCGTGACGAAACAAGGTTTGACCCATACTCAAATCGCTGAAAAACTTGGCAAATCTAGACCTTATG
TGACCAATGCCATTCGAATTTTAAATCTCCCTGACCCAATTTTAGAGATGATTGAGGTGCAAAAGATCTCCCAAGGTCAC
GCGCGACTTTTACTCGGTCTAAAAACACCACAAGAACAATTAGCTTGGGCACAACGGATTGATCAAGAACAACTTTCTGT
TCGCGCACTCGAAAAACGCTTGACCAAACAAACGAACGAGCCTAATATACAATCTTCTAAAGATGTCTTTATCAAATCAG
CTGAAACAGATATTGCGAAAGCTTTGGGTCAAGCAGTAACGATTAAGCCAAACAAAATAGAAATTGCCTACAATACACTA
GAAGATCTTAACAGACTTCTCCTCATTTTGACCCAAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.004

99.209

0.486

Multiple sequence alignment