Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GU336_RS04130 Genome accession   NZ_CP047616
Coordinates   826042..826758 (-) Length   238 a.a.
NCBI ID   WP_096040174.1    Uniprot ID   A0A290Q043
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 821042..831758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS04110 (GU336_04105) glmM 821410..822765 (+) 1356 WP_061774956.1 phosphoglucosamine mutase -
  GU336_RS04115 (GU336_04110) - 822958..824211 (+) 1254 Protein_791 ISL3 family transposase -
  GU336_RS04125 (GU336_04120) - 824337..825665 (-) 1329 WP_061774955.1 FAD-dependent oxidoreductase -
  GU336_RS04130 (GU336_04125) treR 826042..826758 (-) 717 WP_096040174.1 trehalose operon repressor Regulator
  GU336_RS04135 (GU336_04130) - 826868..827740 (+) 873 WP_167838540.1 Cof-type HAD-IIB family hydrolase -
  GU336_RS04140 (GU336_04135) - 827901..829157 (+) 1257 WP_209451939.1 ISL3 family transposase -
  GU336_RS04145 (GU336_04140) - 829309..830298 (+) 990 WP_167838541.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27771.91 Da        Isoelectric Point: 7.4144

>NTDB_id=414646 GU336_RS04130 WP_096040174.1 826042..826758(-) (treR) [Lactococcus raffinolactis strain Lr_19_5]
MKKYEIILHDLEYKIKNKTYQENDLLPSENELVKIYDASRATIRQALKILEEKGLIQKQKGRGSVVIASSKLNFPISGLT
SYKELQNSLGFESVTEVIKFDKITVDSELAAKTLFEIGIPVWRIIRVRKIDGEAVVLDHDFVKYDICPNMTKTDVAYSLY
DYLEKQLKIEISFAQKEITIDFVNDEDRQLLDLNLLDRHIVSVKSHVFLNDASVFQYTDSRHQVDKFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=414646 GU336_RS04130 WP_096040174.1 826042..826758(-) (treR) [Lactococcus raffinolactis strain Lr_19_5]
ATGAAAAAATATGAAATAATTTTACACGATTTGGAATACAAAATAAAAAATAAGACTTATCAGGAAAACGATCTCCTGCC
TAGTGAAAATGAATTGGTCAAAATCTACGACGCCAGTAGAGCAACGATTCGCCAAGCGCTGAAAATTTTGGAAGAAAAGG
GGTTAATTCAGAAACAAAAAGGGCGAGGCTCTGTGGTTATTGCTTCTAGCAAACTTAATTTTCCGATTTCTGGCTTAACC
AGCTACAAGGAACTACAAAATTCACTCGGATTTGAAAGTGTCACTGAAGTCATCAAATTTGACAAAATCACAGTTGACAG
TGAACTTGCTGCAAAAACACTTTTTGAAATCGGAATCCCTGTGTGGCGTATCATACGCGTTCGTAAGATTGACGGTGAAG
CCGTCGTGCTTGATCATGACTTCGTCAAATATGATATTTGTCCCAATATGACCAAAACAGATGTCGCTTATTCACTCTAC
GACTACCTTGAAAAACAGCTGAAAATTGAGATTTCCTTCGCTCAGAAAGAAATTACCATTGATTTCGTTAATGACGAAGA
TCGGCAACTCTTGGACCTGAATCTCTTGGACCGCCATATCGTCAGTGTCAAAAGCCATGTTTTTCTCAATGATGCAAGCG
TCTTTCAATACACGGATAGTCGACATCAAGTTGATAAATTCCGGTTCACTGAATTTGCCAGACGGCAAAAACGTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290Q043

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

48.945

99.58

0.487

Multiple sequence alignment