Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GU336_RS01890 Genome accession   NZ_CP047616
Coordinates   344762..345820 (+) Length   352 a.a.
NCBI ID   WP_167838320.1    Uniprot ID   A0A6H0UA43
Organism   Lactococcus raffinolactis strain Lr_19_5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 339762..350820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU336_RS01875 (GU336_01875) rsmD 343306..343872 (+) 567 WP_167838318.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GU336_RS01880 (GU336_01880) - 343835..344296 (+) 462 WP_167838319.1 ASCH domain-containing protein -
  GU336_RS01885 (GU336_01885) coaD 344293..344775 (+) 483 WP_061773606.1 pantetheine-phosphate adenylyltransferase -
  GU336_RS01890 (GU336_01890) sepM 344762..345820 (+) 1059 WP_167838320.1 SepM family pheromone-processing serine protease Regulator
  GU336_RS01895 (GU336_01895) - 346096..346605 (+) 510 WP_167838321.1 hypothetical protein -
  GU336_RS01900 (GU336_01900) - 346606..347328 (+) 723 WP_167838322.1 GHKL domain-containing protein -
  GU336_RS01905 (GU336_01905) - 347635..348348 (+) 714 WP_061773609.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38073.84 Da        Isoelectric Point: 9.2900

>NTDB_id=414631 GU336_RS01890 WP_167838320.1 344762..345820(+) (sepM) [Lactococcus raffinolactis strain Lr_19_5]
MIKSNKSFIKKRWAIASLVGILVFLGVLLPLPYYVEMPGTTENVGEMIKVNQTPLHQKSEEGSLNLTTVSMMRATGASLI
YAALTDFTDVYSKKDMMGNQTDADYNRMNAFYMASAQNAATYEAFKLAGKPFELDYKGVYVLDVLKKSTFKEVLHIADTV
TGVNGQSFKSSEELMTYIKSQKIGAKISVQYTDEAGKAKSADGKTIKIADGKAGIGITLVDHTEVKSTPSVTIDAGAIGG
PSAGMMFTLEIYSQLTGQDLTKGREIAGTGTIEKDGKIGRIGGIDKKIATASRNGAQIFLAPDDEITPEMKKVEPGVKSN
YQEALAAAKKLNTKMKIVPVKTVQDANDYLKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=414631 GU336_RS01890 WP_167838320.1 344762..345820(+) (sepM) [Lactococcus raffinolactis strain Lr_19_5]
TTGATCAAAAGTAATAAGTCATTTATAAAAAAACGCTGGGCTATTGCTAGTCTTGTTGGTATCCTAGTTTTTCTTGGTGT
TTTGCTCCCCCTACCCTACTATGTTGAGATGCCTGGCACGACTGAAAATGTTGGTGAGATGATAAAAGTCAATCAGACAC
CATTGCACCAAAAATCAGAAGAAGGGTCTTTGAATTTGACGACTGTTTCGATGATGCGGGCAACGGGTGCGAGTTTGATT
TATGCTGCATTGACGGATTTTACCGATGTTTACAGTAAAAAAGACATGATGGGTAACCAGACGGATGCTGATTACAATCG
GATGAATGCTTTTTACATGGCAAGTGCTCAGAATGCTGCAACCTACGAGGCGTTTAAGTTGGCGGGGAAACCCTTTGAGT
TAGATTATAAAGGTGTTTATGTCCTGGATGTGCTGAAGAAATCGACGTTTAAAGAAGTTTTGCATATCGCGGATACAGTG
ACAGGTGTCAATGGGCAAAGTTTTAAATCATCTGAGGAGCTGATGACCTACATCAAGTCCCAAAAGATTGGGGCTAAGAT
TTCAGTTCAGTATACAGATGAAGCGGGTAAGGCAAAATCGGCAGACGGCAAAACGATTAAGATCGCAGATGGTAAAGCTG
GAATTGGGATTACCTTGGTGGATCATACGGAGGTTAAGAGTACGCCATCTGTGACAATTGATGCGGGGGCGATTGGTGGC
CCATCTGCAGGGATGATGTTTACGCTTGAAATCTATTCCCAATTGACGGGCCAAGATTTAACGAAAGGTCGGGAGATTGC
GGGTACAGGTACGATTGAAAAAGATGGGAAAATCGGTCGAATTGGCGGTATTGATAAAAAAATCGCCACTGCCAGTCGCA
ATGGTGCTCAAATTTTTCTAGCGCCTGATGATGAGATAACCCCAGAGATGAAGAAAGTCGAGCCTGGTGTTAAGTCAAAC
TATCAAGAAGCATTGGCTGCAGCTAAAAAACTGAATACAAAGATGAAAATTGTCCCAGTGAAAACAGTGCAGGATGCAAA
TGACTATTTGAAAGAATAG

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(135-192)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

51.282

99.716

0.511

Multiple sequence alignment