Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | GU337_RS09495 | Genome accession | NZ_CP047614 |
| Coordinates | 1892815..1895259 (-) | Length | 814 a.a. |
| NCBI ID | WP_167840226.1 | Uniprot ID | - |
| Organism | Lactococcus raffinolactis strain Lr_19_7 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1887815..1900259
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GU337_RS09475 (GU337_09420) | - | 1887951..1889075 (-) | 1125 | WP_096039505.1 | VanZ family protein | - |
| GU337_RS09480 (GU337_09425) | eno | 1889175..1890500 (-) | 1326 | WP_061774869.1 | phosphopyruvate hydratase | - |
| GU337_RS09485 (GU337_09430) | - | 1890789..1892042 (+) | 1254 | WP_096039647.1 | ISL3 family transposase | - |
| GU337_RS09490 (GU337_09435) | raiA | 1892173..1892724 (-) | 552 | WP_096039506.1 | ribosome-associated translation inhibitor RaiA | - |
| GU337_RS09495 (GU337_09440) | clpC | 1892815..1895259 (-) | 2445 | WP_167840226.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| GU337_RS09500 (GU337_09445) | - | 1895288..1895731 (-) | 444 | WP_061774879.1 | CtsR family transcriptional regulator | - |
| GU337_RS09505 (GU337_09450) | - | 1896118..1896819 (+) | 702 | WP_167840227.1 | XRE family transcriptional regulator | - |
| GU337_RS09510 (GU337_09455) | - | 1896866..1898311 (+) | 1446 | WP_061774865.1 | Y-family DNA polymerase | - |
| GU337_RS09515 | - | 1898308..1898478 (+) | 171 | WP_167372299.1 | hypothetical protein | - |
| GU337_RS09520 (GU337_09460) | - | 1898514..1898915 (+) | 402 | WP_167840228.1 | YbgA family protein | - |
| GU337_RS09525 (GU337_09465) | - | 1898899..1899261 (+) | 363 | WP_061774863.1 | TIGR02328 family protein | - |
| GU337_RS09530 (GU337_09470) | greA | 1899350..1899832 (-) | 483 | WP_003140218.1 | transcription elongation factor GreA | - |
Sequence
Protein
Download Length: 814 a.a. Molecular weight: 89639.47 Da Isoelectric Point: 5.6559
>NTDB_id=414612 GU337_RS09495 WP_167840226.1 1892815..1895259(-) (clpC) [Lactococcus raffinolactis strain Lr_19_7]
MTQNYTHILEDILKTARVFAAGNGYDYAETSHVLAGMLSSNDSFGQNILTDHDVTIEMALDEIEQHQLPEKMQTVQNIQF
SPKVEQLLLEADALAAQNHLAETGSEHLLYVILTDDDNVAKKLLELNKIKITEIVKDLIELGNMNVKKIAKKAVTPMGKR
DIASGVAAASITPTLDSVARDVTEDARQGRIDPMIGRDKEIERVIHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRMIDG
NIPANMQGVRLMSLNIANVVAGTKFRGEFEDRMTAIVDEVSQDANTIVFVDELHTIVGAGGGTDSVTDASNIMKPALARG
EFQLIGATTFNEYQKYIEKDAALERRFAKVTVEEPSSDESIVILQGLQSKFEAFHQVNFDADAVKAAVQLSVRYMPSRRL
PDKAIDLLDEAAAAVKISAKNNLSEQSKLDKKASQLDEQLQEAIINQDFVLAKSLNKDLQKLEAKREKLTVKTKSSRVSE
GDVFAVVSNLTGVPVTQMSQSEMTRLINLEKELHKRVIGQSEAVTAVASAIRRSRSGISDDRRPMGSFMFLGPTGVGKTE
LAKALAETVFGDENSMIRIDMSEYMEKFNTSRLVGAPPGYVGYDEGGQLTEQVRNKPYAVVLFDEAEKAHPDVFNLLLQI
LDDGFITDGKGRKVDFRNTIIIMTSNLGATSLRDDKTVGFGAANASTDYVAMKSRILEELKKRYRPEFLNRIDESIVFHP
LSEQELSDIVKIMAKPLIKRLAERHITLKLSATAYQLIAKNGFEPEYGARPIRKALEKKLENPLSDKILSGEIKAGNSVT
VGVSKGELTIKVID
MTQNYTHILEDILKTARVFAAGNGYDYAETSHVLAGMLSSNDSFGQNILTDHDVTIEMALDEIEQHQLPEKMQTVQNIQF
SPKVEQLLLEADALAAQNHLAETGSEHLLYVILTDDDNVAKKLLELNKIKITEIVKDLIELGNMNVKKIAKKAVTPMGKR
DIASGVAAASITPTLDSVARDVTEDARQGRIDPMIGRDKEIERVIHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRMIDG
NIPANMQGVRLMSLNIANVVAGTKFRGEFEDRMTAIVDEVSQDANTIVFVDELHTIVGAGGGTDSVTDASNIMKPALARG
EFQLIGATTFNEYQKYIEKDAALERRFAKVTVEEPSSDESIVILQGLQSKFEAFHQVNFDADAVKAAVQLSVRYMPSRRL
PDKAIDLLDEAAAAVKISAKNNLSEQSKLDKKASQLDEQLQEAIINQDFVLAKSLNKDLQKLEAKREKLTVKTKSSRVSE
GDVFAVVSNLTGVPVTQMSQSEMTRLINLEKELHKRVIGQSEAVTAVASAIRRSRSGISDDRRPMGSFMFLGPTGVGKTE
LAKALAETVFGDENSMIRIDMSEYMEKFNTSRLVGAPPGYVGYDEGGQLTEQVRNKPYAVVLFDEAEKAHPDVFNLLLQI
LDDGFITDGKGRKVDFRNTIIIMTSNLGATSLRDDKTVGFGAANASTDYVAMKSRILEELKKRYRPEFLNRIDESIVFHP
LSEQELSDIVKIMAKPLIKRLAERHITLKLSATAYQLIAKNGFEPEYGARPIRKALEKKLENPLSDKILSGEIKAGNSVT
VGVSKGELTIKVID
Nucleotide
Download Length: 2445 bp
>NTDB_id=414612 GU337_RS09495 WP_167840226.1 1892815..1895259(-) (clpC) [Lactococcus raffinolactis strain Lr_19_7]
ATGACACAAAATTATACGCACATACTTGAAGATATTCTCAAAACAGCTCGCGTTTTTGCGGCGGGCAATGGTTATGATTA
TGCAGAAACATCACACGTCTTGGCGGGGATGTTATCGAGTAACGATAGCTTTGGCCAAAACATTCTAACGGATCACGATG
TGACGATTGAAATGGCGCTAGATGAAATCGAACAACACCAGTTACCCGAAAAAATGCAAACGGTTCAAAATATCCAATTT
TCACCTAAGGTCGAACAGCTCTTGCTTGAAGCAGATGCACTTGCAGCTCAAAATCATTTGGCAGAAACAGGGTCTGAACA
CTTGCTCTATGTCATCTTGACTGATGATGACAATGTTGCCAAGAAACTTTTGGAACTAAACAAAATCAAAATTACTGAAA
TCGTTAAAGACTTAATTGAGCTCGGTAATATGAATGTCAAAAAAATAGCTAAAAAAGCGGTCACACCGATGGGAAAACGC
GATATCGCATCGGGTGTTGCGGCGGCAAGTATTACACCAACGCTAGATTCAGTGGCGCGTGATGTGACGGAAGATGCTAG
ACAAGGACGCATTGATCCGATGATTGGTCGGGATAAGGAAATTGAGCGCGTGATTCACATTTTGAGTCGCCGGACAAAAA
ATAATCCTGTCCTAGTTGGTGAACCTGGTGTTGGTAAATCAGCTATTATCGAAGGCTTGGCGCAACGTATGATTGATGGC
AATATCCCTGCAAATATGCAAGGTGTACGTCTTATGTCACTTAATATTGCTAATGTGGTTGCCGGTACTAAATTCCGCGG
AGAATTTGAAGACCGGATGACTGCGATTGTTGATGAAGTCAGCCAAGATGCTAACACTATCGTGTTTGTTGATGAGCTCC
ATACTATCGTCGGTGCTGGTGGCGGAACGGATTCTGTTACCGATGCCTCAAACATTATGAAACCTGCACTAGCTCGTGGT
GAGTTTCAGCTGATTGGCGCAACGACCTTTAACGAATACCAAAAATACATCGAAAAAGATGCTGCTCTGGAACGTCGCTT
TGCAAAAGTTACTGTTGAAGAGCCATCTTCAGACGAATCGATTGTAATTCTACAAGGTCTTCAAAGCAAATTTGAAGCCT
TTCATCAGGTAAATTTTGACGCTGATGCAGTCAAGGCAGCGGTTCAGCTCAGTGTTCGCTATATGCCAAGTCGCAGACTG
CCGGATAAGGCCATTGACTTACTCGATGAAGCAGCTGCTGCCGTTAAAATTTCAGCTAAAAATAATTTATCCGAACAAAG
TAAGCTAGATAAAAAAGCATCACAGCTTGATGAACAGTTACAAGAAGCGATTATCAATCAAGATTTTGTGCTAGCTAAAA
GCTTAAACAAAGATCTTCAAAAACTTGAAGCCAAACGTGAGAAACTAACGGTTAAAACAAAGTCGTCTCGTGTGAGCGAA
GGTGATGTCTTTGCGGTTGTGTCTAACTTGACTGGCGTGCCTGTCACACAGATGAGCCAAAGTGAGATGACGCGTTTGAT
TAACTTAGAAAAAGAACTCCATAAACGCGTTATCGGTCAAAGCGAAGCCGTTACAGCTGTTGCTAGTGCTATCCGTCGTA
GTCGTTCAGGCATCTCAGATGACAGACGTCCTATGGGTTCCTTCATGTTCTTGGGGCCTACCGGTGTTGGGAAGACAGAG
CTTGCTAAAGCTCTGGCAGAGACCGTTTTCGGCGATGAAAACAGCATGATTCGTATCGATATGAGCGAATATATGGAGAA
ATTTAACACCAGTCGTTTAGTTGGAGCACCTCCTGGCTATGTTGGCTATGACGAGGGCGGTCAGCTAACCGAGCAGGTGC
GCAACAAGCCTTATGCTGTCGTCCTATTTGACGAGGCTGAGAAAGCCCATCCGGATGTCTTTAACCTCCTGCTCCAAATC
CTTGATGACGGCTTCATCACGGATGGTAAGGGGCGCAAGGTAGACTTCCGCAACACAATCATCATCATGACCAGTAACTT
GGGTGCGACCTCATTACGCGACGATAAGACGGTCGGATTTGGTGCAGCCAATGCCTCAACCGACTACGTCGCCATGAAGT
CTAGAATTTTAGAAGAGTTGAAAAAACGGTATCGCCCAGAGTTTCTCAACCGTATCGATGAAAGCATTGTTTTCCACCCA
CTTTCTGAGCAGGAATTATCAGATATCGTAAAAATCATGGCTAAACCATTGATTAAACGTTTGGCAGAACGTCACATCAC
CTTGAAACTTTCTGCCACTGCCTATCAGCTTATCGCTAAAAATGGCTTTGAACCAGAATATGGGGCCCGTCCAATCAGAA
AAGCTTTGGAGAAAAAACTTGAGAATCCTCTGTCGGATAAAATTTTATCAGGCGAAATTAAGGCTGGAAATAGTGTGACA
GTAGGCGTTTCCAAAGGTGAGTTGACAATCAAAGTTATTGATTAA
ATGACACAAAATTATACGCACATACTTGAAGATATTCTCAAAACAGCTCGCGTTTTTGCGGCGGGCAATGGTTATGATTA
TGCAGAAACATCACACGTCTTGGCGGGGATGTTATCGAGTAACGATAGCTTTGGCCAAAACATTCTAACGGATCACGATG
TGACGATTGAAATGGCGCTAGATGAAATCGAACAACACCAGTTACCCGAAAAAATGCAAACGGTTCAAAATATCCAATTT
TCACCTAAGGTCGAACAGCTCTTGCTTGAAGCAGATGCACTTGCAGCTCAAAATCATTTGGCAGAAACAGGGTCTGAACA
CTTGCTCTATGTCATCTTGACTGATGATGACAATGTTGCCAAGAAACTTTTGGAACTAAACAAAATCAAAATTACTGAAA
TCGTTAAAGACTTAATTGAGCTCGGTAATATGAATGTCAAAAAAATAGCTAAAAAAGCGGTCACACCGATGGGAAAACGC
GATATCGCATCGGGTGTTGCGGCGGCAAGTATTACACCAACGCTAGATTCAGTGGCGCGTGATGTGACGGAAGATGCTAG
ACAAGGACGCATTGATCCGATGATTGGTCGGGATAAGGAAATTGAGCGCGTGATTCACATTTTGAGTCGCCGGACAAAAA
ATAATCCTGTCCTAGTTGGTGAACCTGGTGTTGGTAAATCAGCTATTATCGAAGGCTTGGCGCAACGTATGATTGATGGC
AATATCCCTGCAAATATGCAAGGTGTACGTCTTATGTCACTTAATATTGCTAATGTGGTTGCCGGTACTAAATTCCGCGG
AGAATTTGAAGACCGGATGACTGCGATTGTTGATGAAGTCAGCCAAGATGCTAACACTATCGTGTTTGTTGATGAGCTCC
ATACTATCGTCGGTGCTGGTGGCGGAACGGATTCTGTTACCGATGCCTCAAACATTATGAAACCTGCACTAGCTCGTGGT
GAGTTTCAGCTGATTGGCGCAACGACCTTTAACGAATACCAAAAATACATCGAAAAAGATGCTGCTCTGGAACGTCGCTT
TGCAAAAGTTACTGTTGAAGAGCCATCTTCAGACGAATCGATTGTAATTCTACAAGGTCTTCAAAGCAAATTTGAAGCCT
TTCATCAGGTAAATTTTGACGCTGATGCAGTCAAGGCAGCGGTTCAGCTCAGTGTTCGCTATATGCCAAGTCGCAGACTG
CCGGATAAGGCCATTGACTTACTCGATGAAGCAGCTGCTGCCGTTAAAATTTCAGCTAAAAATAATTTATCCGAACAAAG
TAAGCTAGATAAAAAAGCATCACAGCTTGATGAACAGTTACAAGAAGCGATTATCAATCAAGATTTTGTGCTAGCTAAAA
GCTTAAACAAAGATCTTCAAAAACTTGAAGCCAAACGTGAGAAACTAACGGTTAAAACAAAGTCGTCTCGTGTGAGCGAA
GGTGATGTCTTTGCGGTTGTGTCTAACTTGACTGGCGTGCCTGTCACACAGATGAGCCAAAGTGAGATGACGCGTTTGAT
TAACTTAGAAAAAGAACTCCATAAACGCGTTATCGGTCAAAGCGAAGCCGTTACAGCTGTTGCTAGTGCTATCCGTCGTA
GTCGTTCAGGCATCTCAGATGACAGACGTCCTATGGGTTCCTTCATGTTCTTGGGGCCTACCGGTGTTGGGAAGACAGAG
CTTGCTAAAGCTCTGGCAGAGACCGTTTTCGGCGATGAAAACAGCATGATTCGTATCGATATGAGCGAATATATGGAGAA
ATTTAACACCAGTCGTTTAGTTGGAGCACCTCCTGGCTATGTTGGCTATGACGAGGGCGGTCAGCTAACCGAGCAGGTGC
GCAACAAGCCTTATGCTGTCGTCCTATTTGACGAGGCTGAGAAAGCCCATCCGGATGTCTTTAACCTCCTGCTCCAAATC
CTTGATGACGGCTTCATCACGGATGGTAAGGGGCGCAAGGTAGACTTCCGCAACACAATCATCATCATGACCAGTAACTT
GGGTGCGACCTCATTACGCGACGATAAGACGGTCGGATTTGGTGCAGCCAATGCCTCAACCGACTACGTCGCCATGAAGT
CTAGAATTTTAGAAGAGTTGAAAAAACGGTATCGCCCAGAGTTTCTCAACCGTATCGATGAAAGCATTGTTTTCCACCCA
CTTTCTGAGCAGGAATTATCAGATATCGTAAAAATCATGGCTAAACCATTGATTAAACGTTTGGCAGAACGTCACATCAC
CTTGAAACTTTCTGCCACTGCCTATCAGCTTATCGCTAAAAATGGCTTTGAACCAGAATATGGGGCCCGTCCAATCAGAA
AAGCTTTGGAGAAAAAACTTGAGAATCCTCTGTCGGATAAAATTTTATCAGGCGAAATTAAGGCTGGAAATAGTGTGACA
GTAGGCGTTTCCAAAGGTGAGTTGACAATCAAAGTTATTGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
62.099 |
99.509 |
0.618 |
| clpC | Streptococcus pneumoniae Rx1 |
49.337 |
100 |
0.502 |
| clpC | Streptococcus pneumoniae D39 |
49.337 |
100 |
0.502 |
| clpC | Streptococcus thermophilus LMD-9 |
49.041 |
100 |
0.502 |
| clpC | Streptococcus pneumoniae TIGR4 |
49.216 |
100 |
0.501 |
| clpC | Streptococcus thermophilus LMG 18311 |
48.801 |
100 |
0.5 |
| clpC | Streptococcus mutans UA159 |
47.368 |
100 |
0.486 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
47.922 |
100 |
0.482 |
| clpE | Streptococcus pneumoniae TIGR4 |
46.646 |
78.747 |
0.367 |
| clpE | Streptococcus pneumoniae Rx1 |
46.646 |
78.747 |
0.367 |
| clpE | Streptococcus pneumoniae D39 |
46.646 |
78.747 |
0.367 |
| clpE | Streptococcus pneumoniae R6 |
46.646 |
78.747 |
0.367 |
| clpE | Streptococcus mutans UA159 |
46.178 |
78.747 |
0.364 |