Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GU337_RS01160 Genome accession   NZ_CP047614
Coordinates   216412..217470 (+) Length   352 a.a.
NCBI ID   WP_061773607.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_19_7     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 211412..222470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU337_RS01145 (GU337_01145) rsmD 214956..215522 (+) 567 WP_167839639.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GU337_RS01150 (GU337_01150) - 215485..215946 (+) 462 WP_167839640.1 ASCH domain-containing protein -
  GU337_RS01155 (GU337_01155) coaD 215943..216425 (+) 483 WP_061773606.1 pantetheine-phosphate adenylyltransferase -
  GU337_RS01160 (GU337_01160) sepM 216412..217470 (+) 1059 WP_061773607.1 SepM family pheromone-processing serine protease Regulator
  GU337_RS01165 (GU337_01165) - 217754..218986 (+) 1233 WP_138491840.1 GHKL domain-containing protein -
  GU337_RS01170 (GU337_01170) - 219293..220006 (+) 714 WP_061773609.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38056.94 Da        Isoelectric Point: 9.4237

>NTDB_id=414578 GU337_RS01160 WP_061773607.1 216412..217470(+) (sepM) [Lactococcus raffinolactis strain Lr_19_7]
MIKSKKSFIKKRWAIASLVGILVFLGVLLPLPYYVEMPGTTENVGEMIKVNQTPLHQKSEEGALNLTTVSMMRATGASLI
YAALTDFTDVYSKKDMMGNQTDADYNRMNAFYMASAQNAATYEAFKLAGKPFELDYKGVYVLDVLKKSTFKDVLHIADTV
TGVNGQSFKSSEELMTYIKSQKIGAKISVQYTDEAGKAKSADGKTIKIADGKAGIGITLVDHTEVKSTPSVTIDAGAIGG
PSAGMMFTLEIYSQLTGQDLTKGREIAGTGTIEKDGKIGRIGGIDKKIATASRNGAQIFLAPDDEITPEMKKVEPGVKSN
YQEALAAAKKLNTKMKIVPVKTVQDAIDYLKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=414578 GU337_RS01160 WP_061773607.1 216412..217470(+) (sepM) [Lactococcus raffinolactis strain Lr_19_7]
TTGATCAAAAGTAAAAAGTCATTTATAAAAAAACGCTGGGCTATTGCTAGTCTTGTTGGTATCCTAGTTTTTCTTGGTGT
TTTGCTCCCCCTACCCTACTATGTTGAGATGCCTGGCACGACTGAAAATGTTGGTGAGATGATAAAAGTCAATCAGACAC
CATTGCACCAAAAATCAGAAGAAGGGGCTTTGAATTTGACGACTGTTTCGATGATGCGGGCAACGGGTGCGAGCTTGATT
TATGCTGCATTGACGGATTTTACCGATGTTTACAGTAAAAAAGACATGATGGGTAACCAGACGGATGCTGATTACAATCG
GATGAATGCTTTTTACATGGCAAGTGCTCAGAATGCTGCAACCTACGAGGCATTTAAGTTGGCGGGGAAACCCTTTGAGT
TAGATTATAAAGGTGTTTATGTCCTGGATGTGCTGAAGAAATCGACGTTTAAAGATGTTTTGCATATCGCGGATACAGTG
ACAGGTGTCAATGGGCAAAGTTTTAAATCATCTGAGGAGCTGATGACCTACATCAAGTCCCAAAAGATTGGGGCTAAGAT
TTCAGTTCAGTATACAGATGAAGCGGGTAAGGCAAAATCGGCAGACGGCAAAACGATTAAGATCGCAGATGGTAAAGCTG
GAATTGGGATTACCTTGGTGGATCATACGGAGGTTAAGAGTACGCCATCTGTGACAATTGATGCGGGGGCGATTGGTGGC
CCATCTGCAGGGATGATGTTTACGCTTGAAATCTATTCCCAATTGACGGGCCAAGATTTAACGAAAGGTCGGGAGATTGC
GGGTACAGGTACGATTGAAAAAGATGGGAAAATCGGTCGAATTGGCGGTATTGATAAAAAAATCGCCACTGCCAGTCGCA
ATGGTGCTCAAATTTTTCTAGCGCCTGATGATGAGATAACCCCAGAGATGAAGAAAGTCGAGCCTGGTGTTAAGTCAAAC
TATCAAGAAGCATTGGCTGCAGCTAAAAAACTGAATACAAAGATGAAAATTGTCCCAGTGAAAACAGTGCAGGATGCAAT
TGACTATTTGAAAGAATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-321)

PDZ domain (PDZ_2)

(134-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

50.997

99.716

0.509

Multiple sequence alignment