Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GUC46_RS15180 Genome accession   NZ_CP047606
Coordinates   3119285..3119899 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter sp. LUTT5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114285..3124899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUC46_RS15165 (GUC46_15165) helD 3114509..3116563 (-) 2055 WP_121571601.1 DNA helicase IV -
  GUC46_RS15170 (GUC46_15170) - 3116689..3117135 (+) 447 WP_003035892.1 YccF domain-containing protein -
  GUC46_RS15175 (GUC46_15175) yccS 3117154..3119307 (+) 2154 WP_032941200.1 YccS family putative transporter -
  GUC46_RS15180 (GUC46_15180) sxy/tfoX 3119285..3119899 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  GUC46_RS15185 (GUC46_15185) sulA 3120117..3120626 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  GUC46_RS15190 (GUC46_15190) ompA 3120984..3122042 (+) 1059 WP_003836839.1 porin OmpA -
  GUC46_RS15195 (GUC46_15195) matP 3122130..3122582 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  GUC46_RS15200 (GUC46_15200) - 3122768..3124528 (+) 1761 WP_094544804.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=414568 GUC46_RS15180 WP_003035889.1 3119285..3119899(-) (sxy/tfoX) [Citrobacter sp. LUTT5]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=414568 GUC46_RS15180 WP_003035889.1 3119285..3119899(-) (sxy/tfoX) [Citrobacter sp. LUTT5]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment