Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GUK18_RS00430 Genome accession   NZ_CP047600
Coordinates   92187..92816 (+) Length   209 a.a.
NCBI ID   WP_203164385.1    Uniprot ID   -
Organism   Escherichia coli O84:H7 strain Trh52     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 87187..97816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUK18_RS00410 (GUK18_00410) ycbZ 87588..89348 (-) 1761 WP_000156502.1 Lon protease family protein -
  GUK18_RS00415 (GUK18_00415) matP 89534..89986 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  GUK18_RS00420 (GUK18_00420) ompA 90064..91104 (-) 1041 WP_001441917.1 porin OmpA -
  GUK18_RS00425 (GUK18_00425) sulA 91460..91969 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GUK18_RS00430 (GUK18_00430) sxy/tfoX 92187..92816 (+) 630 WP_203164385.1 TfoX/Sxy family DNA transformation protein Regulator
  GUK18_RS00435 (GUK18_00435) yccS 92779..94941 (-) 2163 WP_000875068.1 YccS family putative transporter -
  GUK18_RS00440 (GUK18_00440) yccF 94951..95397 (-) 447 WP_001261235.1 YccF domain-containing protein -
  GUK18_RS00445 (GUK18_00445) helD 95520..97574 (+) 2055 WP_203164483.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24098.03 Da        Isoelectric Point: 9.2180

>NTDB_id=414462 GUK18_RS00430 WP_203164385.1 92187..92816(+) (sxy/tfoX) [Escherichia coli O84:H7 strain Trh52]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQGAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=414462 GUK18_RS00430 WP_203164385.1 92187..92816(+) (sxy/tfoX) [Escherichia coli O84:H7 strain Trh52]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAGGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986

Multiple sequence alignment