Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ETEC_RS02805 Genome accession   NC_017633
Coordinates   555399..556004 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli ETEC H10407     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 550399..561004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETEC_RS02775 (ETEC_0518) rsmS 551104..551265 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  ETEC_RS02780 (ETEC_0519) priC 551279..551806 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  ETEC_RS02785 (ETEC_0520) ybaN 551876..552253 (+) 378 WP_001188905.1 DUF454 family protein -
  ETEC_RS02790 (ETEC_0521) apt 552406..552957 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ETEC_RS02795 (ETEC_0522) dnaX 553086..555017 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  ETEC_RS02800 (ETEC_0523) ybaB 555070..555399 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ETEC_RS02805 (ETEC_0524) recR 555399..556004 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ETEC_RS02810 (ETEC_0525) htpG 556114..557988 (+) 1875 WP_000678199.1 molecular chaperone HtpG -
  ETEC_RS02815 (ETEC_0526) adk 558169..558813 (+) 645 WP_001220233.1 adenylate kinase -
  ETEC_RS02820 (ETEC_0527) hemH 559049..560011 (+) 963 WP_001250088.1 ferrochelatase -
  ETEC_RS02825 (ETEC_0528) aes 560008..560967 (-) 960 WP_000801850.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=41445 ETEC_RS02805 WP_001195025.1 555399..556004(+) (recR) [Escherichia coli ETEC H10407]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=41445 ETEC_RS02805 WP_001195025.1 555399..556004(+) (recR) [Escherichia coli ETEC H10407]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment