Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GRE01_RS01550 Genome accession   NZ_CP047585
Coordinates   325732..327105 (+) Length   457 a.a.
NCBI ID   WP_062813457.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain AGR1487     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 320732..332105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRE01_RS01525 (GRE01_01525) - 321928..323265 (-) 1338 WP_163601341.1 aminopeptidase C -
  GRE01_RS01530 (GRE01_01530) - 323329..323943 (-) 615 WP_049182695.1 sugar O-acetyltransferase -
  GRE01_RS01535 (GRE01_01535) rpiA 323971..324657 (-) 687 WP_049182694.1 ribose-5-phosphate isomerase RpiA -
  GRE01_RS01540 (GRE01_01540) - 324669..324980 (-) 312 WP_049182693.1 GNAT family N-acetyltransferase -
  GRE01_RS01545 (GRE01_01545) - 325180..325719 (+) 540 WP_049182703.1 dUTP diphosphatase -
  GRE01_RS01550 (GRE01_01550) radA 325732..327105 (+) 1374 WP_062813457.1 DNA repair protein RadA Machinery gene
  GRE01_RS01555 (GRE01_01555) - 327138..328271 (+) 1134 WP_163601342.1 PIN/TRAM domain-containing protein -
  GRE01_RS01560 (GRE01_01560) gltX 328342..329838 (+) 1497 WP_057194459.1 glutamate--tRNA ligase -
  GRE01_RS01565 (GRE01_01565) - 329906..330475 (+) 570 WP_004562737.1 TIGR01440 family protein -
  GRE01_RS01570 (GRE01_01570) - 330622..331584 (+) 963 WP_163601268.1 IS30 family transposase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49411.82 Da        Isoelectric Point: 8.7358

>NTDB_id=414321 GRE01_RS01550 WP_062813457.1 325732..327105(+) (radA) [Limosilactobacillus fermentum strain AGR1487]
MAKAKTHFVCQNCGYNSPRYLGRCPNCGQWSTLVEEVEQASTPAAKNATATLTGIVARPQRIQEIDTKKTPRVKTRLNEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSVEHHKVLYVSGEESASQIKLRAQRLDVSGEDFYIYPETNMEAIR
ATIDSIQPEFVIIDSVQTMQAADVTSAIGSVSQIRAVTAQLMQIAKGQNITVFVVGHVTKGGVLAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMNTRGLTEVANPSEIFLEERLKDATGSAVVVSLEGTRPILVEIQALITPTVF
GNAQRTATGLNRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVAIASSYRDKGTRPTDAFVGEVGLT
GEIRRVSRIEQRVAEATKLGFKRILVPKNNLAGWNPPQDIEVVGVTTLGEALKIALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=414321 GRE01_RS01550 WP_062813457.1 325732..327105(+) (radA) [Limosilactobacillus fermentum strain AGR1487]
ATGGCAAAAGCCAAAACACACTTTGTCTGCCAAAACTGCGGTTACAATTCACCGCGCTATTTAGGGCGGTGTCCCAATTG
TGGCCAGTGGAGTACCTTAGTTGAAGAAGTCGAGCAGGCAAGTACCCCGGCGGCTAAAAACGCTACGGCAACCTTAACCG
GGATTGTGGCCCGGCCCCAGCGAATCCAAGAAATTGACACCAAAAAAACGCCCCGGGTTAAGACCCGCTTAAATGAATTA
AACCGGGTGCTAGGTGGCGGAATTGTACCCGGCTCGTTGGTCTTAATTGGTGGGGATCCCGGGATCGGGAAGTCCACCCT
GCTCTTACAAGTGTCGGGGCAACTGAGCGTGGAACACCACAAGGTTCTTTACGTTTCCGGGGAAGAATCGGCCTCCCAAA
TTAAATTGCGGGCCCAACGCTTAGACGTTTCCGGCGAGGACTTTTATATCTACCCGGAAACCAACATGGAAGCCATCCGG
GCGACGATTGATTCCATTCAGCCCGAGTTTGTAATCATTGACTCGGTTCAGACGATGCAGGCGGCCGACGTGACCTCGGC
GATTGGGTCGGTCTCTCAAATCCGGGCGGTCACCGCCCAGTTGATGCAGATTGCCAAGGGGCAAAACATCACGGTCTTCG
TGGTTGGTCACGTCACCAAGGGTGGGGTCTTAGCCGGTCCCAAGATCTTGGAACACATGGTTGACACGGTGCTGTACTTT
GAAGGGGATCTCCACCACACCTACCGGATTTTACGGTCGGTCAAAAACCGGTTTGGGTCCACCAATGAGTTAGGGATCTT
CGAAATGAATACCCGCGGTTTGACCGAGGTCGCAAACCCCTCGGAAATCTTTTTGGAAGAGCGGCTTAAGGATGCCACGG
GGTCGGCCGTGGTCGTATCCCTGGAGGGAACCCGACCGATCCTGGTTGAAATCCAGGCCTTGATCACGCCAACCGTCTTT
GGAAACGCCCAAAGAACGGCGACGGGTTTAAACCGCAACCGGGTTTCCTTGATCATGGCGGTCCTAGAAAAACGGGCGAA
CCTGCTCTTACAAAACCAGGATGCCTACTTGAAGGCGGCCGGGGGCGTTAAGTTAGACGAGCCGGCCATCGACCTGGCGA
TCGCGGTGGCAATTGCTTCTTCTTACCGGGATAAGGGGACCAGGCCGACCGACGCCTTCGTCGGTGAAGTTGGCTTAACC
GGGGAGATCCGTCGGGTGAGCCGAATTGAACAGCGGGTGGCCGAAGCCACTAAACTAGGCTTTAAGCGGATTTTAGTGCC
CAAAAACAATTTAGCGGGTTGGAACCCGCCGCAAGACATCGAAGTCGTGGGGGTAACGACCCTTGGCGAAGCACTTAAAA
TTGCCCTTGGATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(64-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.991

99.125

0.674
  radA Streptococcus mitis NCTC 12261

67.77

99.125

0.672
  radA Streptococcus pneumoniae Rx1

67.77

99.125

0.672
  radA Streptococcus pneumoniae D39

67.77

99.125

0.672
  radA Streptococcus pneumoniae R6

67.77

99.125

0.672
  radA Streptococcus pneumoniae TIGR4

67.77

99.125

0.672
  radA Bacillus subtilis subsp. subtilis str. 168

63.457

100

0.635

Multiple sequence alignment