Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GTQ78_RS13445 Genome accession   NZ_CP047571
Coordinates   2776005..2776634 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2EC1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2771005..2781634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ78_RS13430 (GTQ78_13430) helD 2771247..2773301 (-) 2055 WP_137433882.1 DNA helicase IV -
  GTQ78_RS13435 (GTQ78_13435) yccF 2773424..2773870 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GTQ78_RS13440 (GTQ78_13440) yccS 2773880..2776042 (+) 2163 WP_000875061.1 YccS family putative transporter -
  GTQ78_RS13445 (GTQ78_13445) sxy/tfoX 2776005..2776634 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GTQ78_RS13450 (GTQ78_13450) sulA 2776853..2777362 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GTQ78_RS13455 (GTQ78_13455) ompA 2777719..2778759 (+) 1041 WP_000750416.1 porin OmpA -
  GTQ78_RS13460 (GTQ78_13460) matP 2778835..2779287 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GTQ78_RS13465 (GTQ78_13465) ycbZ 2779473..2781233 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=414263 GTQ78_RS13445 WP_000839153.1 2776005..2776634(-) (sxy/tfoX) [Escherichia coli strain 2EC1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=414263 GTQ78_RS13445 WP_000839153.1 2776005..2776634(-) (sxy/tfoX) [Escherichia coli strain 2EC1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment