Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GTQ93_RS13015 Genome accession   NZ_CP047570
Coordinates   2695717..2696343 (-) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain F2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2690717..2701343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ93_RS13000 (GTQ93_13000) helD 2690956..2693010 (-) 2055 WP_062937643.1 DNA helicase IV -
  GTQ93_RS13005 (GTQ93_13005) - 2693133..2693579 (+) 447 WP_015570894.1 YccF domain-containing protein -
  GTQ93_RS13010 (GTQ93_13010) yccS 2693598..2695760 (+) 2163 WP_015570895.1 YccS family putative transporter -
  GTQ93_RS13015 (GTQ93_13015) sxy/tfoX 2695717..2696343 (-) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  GTQ93_RS13020 (GTQ93_13020) sulA 2696561..2697070 (+) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  GTQ93_RS13025 (GTQ93_13025) ompA 2697427..2698479 (+) 1053 WP_017694761.1 porin OmpA -
  GTQ93_RS13030 (GTQ93_13030) matP 2698545..2698997 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  GTQ93_RS13035 (GTQ93_13035) - 2699184..2700944 (+) 1761 WP_033487273.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=414240 GTQ93_RS13015 WP_017384804.1 2695717..2696343(-) (sxy/tfoX) [Enterobacter hormaechei strain F2]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=414240 GTQ93_RS13015 WP_017384804.1 2695717..2696343(-) (sxy/tfoX) [Enterobacter hormaechei strain F2]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment