Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   GTQ93_RS01570 Genome accession   NZ_CP047570
Coordinates   316714..318147 (-) Length   477 a.a.
NCBI ID   WP_003861864.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain F2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311714..323147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ93_RS01540 (GTQ93_01540) elbB 313246..313899 (+) 654 WP_032672055.1 isoprenoid biosynthesis glyoxalase ElbB -
  GTQ93_RS01545 (GTQ93_01545) mtgA 313896..314621 (+) 726 WP_032672054.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  GTQ93_RS01550 (GTQ93_01550) npr 314661..314933 (-) 273 WP_133983261.1 PTS phosphocarrier protein NPr -
  GTQ93_RS01555 (GTQ93_01555) rapZ 314930..315784 (-) 855 WP_003861870.1 RNase adapter RapZ -
  GTQ93_RS01560 (GTQ93_01560) ptsN 315830..316321 (-) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  GTQ93_RS01565 (GTQ93_01565) hpf 316404..316691 (-) 288 WP_003861866.1 ribosome hibernation promoting factor -
  GTQ93_RS01570 (GTQ93_01570) rpoN/rpoN1 316714..318147 (-) 1434 WP_003861864.1 RNA polymerase factor sigma-54 Machinery gene
  GTQ93_RS01575 (GTQ93_01575) lptB 318195..318920 (-) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  GTQ93_RS01580 (GTQ93_01580) lptA 318927..319481 (-) 555 WP_006812136.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  GTQ93_RS01585 (GTQ93_01585) lptC 319450..320025 (-) 576 WP_015571983.1 LPS export ABC transporter periplasmic protein LptC -
  GTQ93_RS01590 (GTQ93_01590) kdsC 320022..320588 (-) 567 WP_063135409.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  GTQ93_RS01595 (GTQ93_01595) kdsD 320603..321589 (-) 987 WP_003861853.1 arabinose-5-phosphate isomerase KdsD -
  GTQ93_RS01600 (GTQ93_01600) - 321603..322580 (-) 978 WP_045907660.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54099.96 Da        Isoelectric Point: 4.3358

>NTDB_id=414229 GTQ93_RS01570 WP_003861864.1 316714..318147(-) (rpoN/rpoN1) [Enterobacter hormaechei strain F2]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=414229 GTQ93_RS01570 WP_003861864.1 316714..318147(-) (rpoN/rpoN1) [Enterobacter hormaechei strain F2]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTACAGCAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGCTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACGCCCAGCAGACGCAGGACACAGAAACGCTCGACTCCGTAGATGCGCTCGAACAGAAAGAGATGCCGGAC
GAACTGCCGCTGGATGCCAGCTGGGATGAAATCTACACCGCGGGTACCCCTTCCGGGACGCGCGCAGACTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACCACCCAGTCGCTTCAGGACTACCTGATGTGGCAGGTAGAGCTGACCCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTTGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATCGAAGCCGTTCTGAAACGCGTTCAGCGTTTCGACCC
GATAGGTGTCGCCGCGAAAGATCTGCGCGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCCAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGATCATTTGGATCTGCTGGCGAATCACGACTTCCGCACCCTGATGCGCGTCACACGC
CTGAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGTCCGGGGCAGTCGATCCAGACCAG
CGAACCGGAATATGTCATCCCCGATGTGCTGGTGAGAAAACACAATGGCCGGTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCCCGTAACGACGCTGATAATCAATACATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTGATCAAGAGCCTGGAGAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCAGACATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAATATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCTATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48

Multiple sequence alignment