Detailed information NTG0413975

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I5155_RS07880
• Genome accession: NZ_CP060243
• Coordinates: 1673653..1674657 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain A-I-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1668653..1679657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5155_RS07850 (I5155_001619)	fghA	1668745..1669596 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
I5155_RS07855 (I5155_001620)	ispF	1669667..1670140 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I5155_RS07860 (I5155_001621)	truD	1670137..1671204 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
I5155_RS07865 (I5155_001622)	surE	1671192..1671941 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
I5155_RS07870 (I5155_001623)	-	1671974..1672609 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
I5155_RS07875 (I5155_001624)	-	1672655..1673548 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
I5155_RS07880 (I5155_001625)	rpoS	1673653..1674657 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
I5155_RS07885 (I5155_001626)	fdxA	1675084..1675407 (-)	324	WP_003092272.1	ferredoxin FdxA	-
I5155_RS07890 (I5155_001627)	mutS	1675474..1678041 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
I5155_RS07895 (I5155_001629)	-	1678167..1679174 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=413975 I5155_RS07880 WP_003113871.1 1673653..1674657(+) (rpoS) [Pseudomonas aeruginosa strain A-I-1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=413975 I5155_RS07880 WP_003113871.1 1673653..1674657(+) (rpoS) [Pseudomonas aeruginosa strain A-I-1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653