Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   I5154_RS12120 Genome accession   NZ_CP060242
Coordinates   2592016..2592630 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain B-I-1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2587016..2597630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5154_RS12095 (I5154_002493) - 2587473..2587736 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  I5154_RS12100 (I5154_002494) topA 2587827..2590433 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  I5154_RS12105 (I5154_002495) - 2590540..2591058 (+) 519 WP_003091199.1 DUF6586 family protein -
  I5154_RS12110 (I5154_002496) - 2591264..2591497 (+) 234 WP_003109483.1 hypothetical protein -
  I5154_RS12115 (I5154_002497) sulA 2591519..2592004 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  I5154_RS12120 (I5154_002498) dinR/lexA 2592016..2592630 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  I5154_RS12125 (I5154_002499) psrA 2592862..2593563 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  I5154_RS12130 (I5154_002500) nagZ 2593765..2594761 (+) 997 Protein_2405 beta-N-acetylhexosaminidase -
  I5154_RS12135 (I5154_002501) - 2594773..2595510 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  I5154_RS12140 (I5154_002502) - 2595557..2596186 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=413882 I5154_RS12120 WP_003091196.1 2592016..2592630(-) (dinR/lexA) [Pseudomonas aeruginosa strain B-I-1]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=413882 I5154_RS12120 WP_003091196.1 2592016..2592630(-) (dinR/lexA) [Pseudomonas aeruginosa strain B-I-1]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCCAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCAGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387