Detailed information NTG0041388

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: HMPREF0833_RS06465
• Genome accession: NC_015678
• Coordinates: 1393817..1395154 (-)
• Length: 445 a.a.
• NCBI ID: WP_257000682.1
• Uniprot ID: -
• Organism: Streptococcus parasanguinis ATCC 15912
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1388817..1400154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF0833_RS06460 (HMPREF0833_11316)	-	1393220..1393717 (-)	498	WP_013904250.1	carbonic anhydrase	-
HMPREF0833_RS06465 (HMPREF0833_11317)	radA	1393817..1395154 (-)	1338	WP_257000682.1	DNA repair protein RadA	Machinery gene
HMPREF0833_RS06470 (HMPREF0833_11318)	-	1395192..1395731 (-)	540	WP_013904252.1	histidine phosphatase family protein	-
HMPREF0833_RS06475 (HMPREF0833_11319)	-	1395733..1396176 (-)	444	WP_115276793.1	dUTP diphosphatase	-
HMPREF0833_RS06480 (HMPREF0833_11320)	-	1396483..1399317 (-)	2835	WP_013904254.1	LPXTG cell wall anchor domain-containing protein	-
HMPREF0833_RS11145	-	1399487..1399585 (-)	99	WP_080559864.1	KxYKxGKxW signal peptide domain-containing protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 48385.60 Da
• Isoelectric Point: 5.8081

>NTDB_id=41388 HMPREF0833_RS06465 WP_257000682.1 1393817..1395154(-) (radA) [Streptococcus parasanguinis ATCC 15912]
MCQNCAYNSPKYLGRCPNCGSWSSFFEEVEVAEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNRVLGGGVVPG
SLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLI
IDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILR
AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDF
NRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEVRRVNRIEQR
INEAAKLGFTKIYVPKNSLTGITPPAGIQVIGVTTIGEVLKKVFG

Nucleotide

• Length: 1338 bp

>NTDB_id=41388 HMPREF0833_RS06465 WP_257000682.1 1393817..1395154(-) (radA) [Streptococcus parasanguinis ATCC 15912]
ATTTGTCAAAATTGTGCCTATAATTCACCCAAATACCTAGGGCGCTGTCCTAACTGTGGTTCTTGGTCTTCTTTTTTCGA
GGAGGTCGAGGTCGCAGAGGTCAAGAATGCACGGGTATCCTTGACGGGTGAAAAGACCAAACCCATGAAATTGGCGGACG
TGACCTCTATCAATGTCCATCGGACCAAGACCGAGATGGAGGAATTTAACCGCGTCCTTGGTGGAGGTGTGGTGCCGGGA
AGTCTGGTCCTCATCGGGGGAGATCCAGGGATTGGGAAATCGACCCTGCTCCTTCAAGTCTCGACTCAACTGTCTCAAGT
GGGAACGGTCCTCTATGTCAGTGGGGAGGAGTCGGCCCAGCAGATCAAACTCCGAGCAGAGCGCTTAGGGGATATCGACA
GTGAGTTTTACCTCTATGCTGAGACCAATATGCAGAGCGTGCGAGCAGAAGTGGAGCGCATCCAGCCAGATTTTCTCATC
ATCGACTCTATCCAGACCATTATGTCTCCTGAAATTTCAGGGGTGCAGGGGTCAGTCTCTCAGGTGCGAGAGGTAACAGC
TGAGCTCATGCAGTTGGCTAAGACTAATAACATTGCCATCTTTATCGTCGGTCATGTGACCAAGGAAGGAACCTTGGCAG
GGCCTCGGATGCTGGAGCATATGGTGGATACGGTGCTCTACTTTGAAGGCGAACGCCACCACACCTTCCGAATCCTGAGA
GCCGTCAAAAACCGCTTTGGCTCGACCAATGAGATCGGAATCTTTGAGATGCAATCAGGTGGCCTGGTCGAGGTCCTCAA
TCCTAGTCAGGTCTTTCTAGAAGAGCGTTTAGATGGCGCGACTGGATCCTCTATCGTAGTTACTATGGAGGGAACACGTC
CGATTCTAGCCGAAGTGCAGGCCTTGGTGACGCCAACCATGTTTGGAAATGCCAAGCGGACGACAACTGGGCTTGATTTC
AATCGGGCCAGTCTCATCATGGCGGTGTTAGAAAAACGCGCAGGCCTCTTGCTCCAAAATCAGGATGCCTATCTTAAGTC
TGCAGGTGGCGTCAAATTGGATGAGCCAGCTATCGACCTAGCCGTGGCCGTAGCCATTGCCTCCAGCTACAAGGACAAGC
CAACCAACCCGCAAGAGTGTTTCGTTGGAGAGTTGGGCTTGACTGGAGAAGTCCGCCGGGTCAACCGGATCGAGCAACGG
ATCAATGAAGCTGCTAAACTTGGTTTTACCAAGATTTATGTTCCGAAAAATTCTCTGACGGGGATTACCCCGCCAGCTGG
GATTCAGGTAATTGGGGTGACGACCATTGGTGAAGTCTTGAAGAAGGTTTTTGGCTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (57-210)

• Subunit ChlI of Mg-chelatase (ChlI) (352-417)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (2-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis SK321	97.753	100	0.978
radA	Streptococcus mitis NCTC 12261	97.528	100	0.975
radA	Streptococcus pneumoniae Rx1	97.528	100	0.975
radA	Streptococcus pneumoniae D39	97.528	100	0.975
radA	Streptococcus pneumoniae R6	97.528	100	0.975
radA	Streptococcus pneumoniae TIGR4	97.528	100	0.975
radA	Bacillus subtilis subsp. subtilis str. 168	62.584	100	0.631