Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GT391_RS04705 Genome accession   NZ_CP047495
Coordinates   1064316..1065698 (+) Length   460 a.a.
NCBI ID   WP_010284683.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain 1692     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1059316..1070698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT391_RS04685 (GT391_04685) prfC 1059600..1061189 (-) 1590 WP_010284696.1 peptide chain release factor 3 -
  GT391_RS04690 (GT391_04690) - 1061481..1062416 (+) 936 WP_010284695.1 hypothetical protein -
  GT391_RS04695 (GT391_04695) - 1062470..1063165 (-) 696 WP_010284685.1 YtjB family periplasmic protein -
  GT391_RS04700 (GT391_04700) serB 1063322..1064299 (+) 978 WP_010284684.1 phosphoserine phosphatase -
  GT391_RS04705 (GT391_04705) radA 1064316..1065698 (+) 1383 WP_010284683.1 DNA repair protein RadA Machinery gene
  GT391_RS04710 (GT391_04710) nadR 1065816..1067069 (+) 1254 WP_010284682.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  GT391_RS04715 (GT391_04715) - 1067066..1067713 (-) 648 WP_010284681.1 5-formyltetrahydrofolate cyclo-ligase -
  GT391_RS04725 (GT391_04725) zapA 1068012..1068341 (-) 330 WP_010284667.1 cell division protein ZapA -
  GT391_RS04730 (GT391_04730) - 1068534..1069121 (+) 588 WP_010284662.1 YecA family protein -
  GT391_RS04735 (GT391_04735) pepP 1069179..1070504 (+) 1326 WP_010284660.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49622.16 Da        Isoelectric Point: 7.4218

>NTDB_id=413855 GT391_RS04705 WP_010284683.1 1064316..1065698(+) (radA) [Pectobacterium brasiliense strain 1692]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASTSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETATYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=413855 GT391_RS04705 WP_010284683.1 1064316..1065698(+) (radA) [Pectobacterium brasiliense strain 1692]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTCCGTCTGGCCTCGGCGTCAACATCACGTTCCGACCGTCTCACCGGCTATG
CGGGCGAAAGCGCTGGCGTCAGCCGGGTACAAAAGCTCTCGGAAATCAGTCTCGAAGCCCTGCCGCGCTTTTCCACCGGG
TTTCAGGAGTTTGACCGCGTTCTGGGTGGCGGCGTCGTTCCTGGCAGCGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCTTACTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCGCATCGTCTCAACCTGCCGACCCAGAATCTTAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTGATGCATCTCGCTGATAT
TCAATCGTCTCCCGGTAGCGTAGCGCAGGTGCGTGAAACTGCCACCTACCTGACGCGCTTCGCCAAAACACGCGGCGTTG
CTATCGTGATGGTCGGCCATGTCACCAAAGACGGTTCGCTGGCCGGGCCGAAAGTGTTAGAACACTGCATCGACTGCTCC
GTGCTGTTGGATGGCGATGCCGATTCACGCTTCCGCACCCTGCGCAGCCATAAAAACCGCTTCGGTGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGGCTCCGCGAGATCAGCAATCCGTCGGCAATTTTCCTCAGTCGCGGTGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGTACGCGTCCGCTGCTGGTCGAAATTCAGGCGCTGGTGGATCAA
TCGATGATGGCTAACCCACGCCGCGTGGCGGTCGGGCTGGAGCAAAACCGATTGGCGATCCTGCTGGCGGTATTACATCG
CCACGGCGGTTTGCAGATGTCCGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGCGCCG
ACCTGGCGCTGCTATTATCCCTGGTCTCCAGCTTCCGCGACCGCCCACTGCCGCAGGATCTTGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCGAGCGGCCAAGAGCGGATTACCGAAGCCGCTAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTAGCCGACGCGC
TGGCAATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus mitis NCTC 12261

42.763

99.13

0.424
  radA Streptococcus mitis SK321

42.763

99.13

0.424
  radA Streptococcus pneumoniae Rx1

42.763

99.13

0.424
  radA Streptococcus pneumoniae D39

42.763

99.13

0.424
  radA Streptococcus pneumoniae R6

42.763

99.13

0.424
  radA Streptococcus pneumoniae TIGR4

42.763

99.13

0.424

Multiple sequence alignment