Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IXO1104_RS08410 Genome accession   NZ_CP047492
Coordinates   1820318..1820719 (+) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas oryzae pv. oryzae strain IXO1104     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815318..1825719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXO1104_RS08390 (IXO1104_08345) tsaB 1816320..1817039 (+) 720 WP_012445327.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  IXO1104_RS08395 (IXO1104_08350) - 1817002..1817952 (+) 951 WP_044757457.1 ADP-ribosylglycohydrolase family protein -
  IXO1104_RS08400 (IXO1104_08355) - 1818246..1819121 (-) 876 WP_011258506.1 TonB family protein -
  IXO1104_RS08405 (IXO1104_08360) gshB 1819118..1820068 (-) 951 WP_011408182.1 glutathione synthase -
  IXO1104_RS08410 (IXO1104_08365) pilG 1820318..1820719 (+) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  IXO1104_RS08415 (IXO1104_08370) - 1820737..1821099 (+) 363 WP_011258508.1 response regulator -
  IXO1104_RS08420 (IXO1104_08375) - 1821099..1821629 (+) 531 WP_003482487.1 chemotaxis protein CheW -
  IXO1104_RS08425 (IXO1104_08380) - 1821669..1823705 (+) 2037 WP_011258510.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=413807 IXO1104_RS08410 WP_005913706.1 1820318..1820719(+) (pilG) [Xanthomonas oryzae pv. oryzae strain IXO1104]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=413807 IXO1104_RS08410 WP_005913706.1 1820318..1820719(+) (pilG) [Xanthomonas oryzae pv. oryzae strain IXO1104]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTCAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTTGACATCATGATGCCGCGCCTGGATGGCTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAATCGACGCCGGTAATCATGTTGTCGTCCAAGGATGGGCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGTTCCGAGCAATATCTGACCAAGCCGTTCACCCGTGAAGAACTATTGAGCGCAATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment