Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | GTW28_RS13135 | Genome accession | NZ_CP047485 |
| Coordinates | 2538505..2538915 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain BJQ0005 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2533871..2587962 | 2538505..2538915 | within | 0 |
Gene organization within MGE regions
Location: 2533871..2587962
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTW28_RS13110 (GTW28_13110) | yqeF | 2534038..2534769 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| GTW28_RS13115 (GTW28_13115) | cwlH | 2535021..2535773 (-) | 753 | WP_046381197.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| GTW28_RS13120 (GTW28_13120) | yqeD | 2535960..2536586 (+) | 627 | WP_046381198.1 | TVP38/TMEM64 family protein | - |
| GTW28_RS13125 (GTW28_13125) | gnd | 2536605..2537498 (-) | 894 | WP_015714298.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| GTW28_RS13130 (GTW28_13130) | yqeB | 2537750..2538472 (+) | 723 | WP_046381199.1 | hypothetical protein | - |
| GTW28_RS13135 (GTW28_13135) | nucA/comI | 2538505..2538915 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| GTW28_RS13140 (GTW28_13140) | - | 2539111..2539458 (+) | 348 | Protein_2557 | sigma-70 family RNA polymerase sigma factor | - |
| GTW28_RS13145 (GTW28_13145) | spoIVCA | 2539489..2540949 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| GTW28_RS21445 | - | 2540907..2541085 (-) | 179 | Protein_2559 | hypothetical protein | - |
| GTW28_RS13150 (GTW28_13150) | arsC | 2541440..2541859 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| GTW28_RS13155 (GTW28_13155) | acr3 | 2541871..2542911 (-) | 1041 | WP_032722149.1 | arsenite efflux transporter Acr3 | - |
| GTW28_RS13160 (GTW28_13160) | arsK | 2542934..2543374 (-) | 441 | WP_032722151.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| GTW28_RS13165 (GTW28_13165) | arsR | 2543433..2543750 (-) | 318 | WP_029318103.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| GTW28_RS13170 (GTW28_13170) | yqcI | 2544122..2544886 (-) | 765 | WP_017696291.1 | YqcI/YcgG family protein | - |
| GTW28_RS13175 (GTW28_13175) | rapE | 2545329..2546456 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| GTW28_RS13180 (GTW28_13180) | phrE | 2546446..2546580 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| GTW28_RS13185 (GTW28_13185) | - | 2546690..2546848 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| GTW28_RS13190 (GTW28_13190) | yqcG | 2547218..2548813 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| GTW28_RS13195 (GTW28_13195) | yqcF | 2548828..2549406 (+) | 579 | WP_046160613.1 | type VII secretion system immunity protein YqcF | - |
| GTW28_RS13200 (GTW28_13200) | - | 2549516..2549989 (-) | 474 | WP_052720007.1 | hypothetical protein | - |
| GTW28_RS13205 (GTW28_13205) | - | 2549989..2550603 (-) | 615 | WP_046160614.1 | hypothetical protein | - |
| GTW28_RS13210 (GTW28_13210) | cwlA | 2550775..2551599 (-) | 825 | WP_046160615.1 | N-acetylmuramoyl-L-alanine amidase | - |
| GTW28_RS13215 (GTW28_13215) | skhD | 2551644..2552066 (-) | 423 | WP_003246208.1 | holin family protein | - |
| GTW28_RS13220 (GTW28_13220) | xepAK | 2552112..2553005 (-) | 894 | WP_046160616.1 | hypothetical protein | - |
| GTW28_RS13225 (GTW28_13225) | yqcE | 2553094..2553258 (-) | 165 | WP_041850053.1 | XkdX family protein | - |
| GTW28_RS13230 (GTW28_13230) | yqcD | 2553255..2553590 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| GTW28_RS13235 (GTW28_13235) | - | 2553600..2554694 (-) | 1095 | WP_046160617.1 | hypothetical protein | - |
| GTW28_RS13240 (GTW28_13240) | - | 2554698..2554970 (-) | 273 | WP_032722163.1 | hypothetical protein | - |
| GTW28_RS13245 (GTW28_13245) | yqcA | 2554967..2555545 (-) | 579 | WP_032722164.1 | YmfQ family protein | - |
| GTW28_RS13250 (GTW28_13250) | yqbT | 2555529..2556575 (-) | 1047 | WP_032722165.1 | baseplate J/gp47 family protein | - |
| GTW28_RS13255 (GTW28_13255) | yqbS | 2556568..2556993 (-) | 426 | WP_032722166.1 | DUF2634 domain-containing protein | - |
| GTW28_RS13260 (GTW28_13260) | yqbR | 2557006..2557272 (-) | 267 | WP_032722167.1 | DUF2577 family protein | - |
| GTW28_RS13265 (GTW28_13265) | yqbQ | 2557269..2558249 (-) | 981 | WP_032722168.1 | hypothetical protein | - |
| GTW28_RS13270 (GTW28_13270) | yqbP | 2558262..2558921 (-) | 660 | WP_032722169.1 | LysM peptidoglycan-binding domain-containing protein | - |
| GTW28_RS13275 (GTW28_13275) | yqbO | 2558914..2563671 (-) | 4758 | WP_043940167.1 | phage tail tape measure protein | - |
| GTW28_RS13280 (GTW28_13280) | - | 2563674..2563811 (-) | 138 | WP_021480099.1 | hypothetical protein | - |
| GTW28_RS13285 (GTW28_13285) | - | 2563853..2564302 (-) | 450 | WP_032722171.1 | phage portal protein | - |
| GTW28_RS13290 (GTW28_13290) | txpA | 2564448..2564627 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| GTW28_RS13295 (GTW28_13295) | bsrH | 2565007..2565096 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| GTW28_RS13300 (GTW28_13300) | yqbM | 2565350..2565793 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| GTW28_RS13305 (GTW28_13305) | yqbK | 2565796..2567196 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| GTW28_RS13310 (GTW28_13310) | - | 2567197..2567388 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| GTW28_RS13315 (GTW28_13315) | yqbJ | 2567385..2567822 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| GTW28_RS13320 (GTW28_13320) | yqbI | 2567835..2568338 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| GTW28_RS13325 (GTW28_13325) | yqbH | 2568335..2568697 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| GTW28_RS13330 (GTW28_13330) | gkpG | 2568694..2569089 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| GTW28_RS13335 (GTW28_13335) | yqbF | 2569093..2569404 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| GTW28_RS13340 (GTW28_13340) | skdG | 2569415..2570350 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| GTW28_RS13345 (GTW28_13345) | yqbD | 2570369..2571337 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| GTW28_RS13350 (GTW28_13350) | - | 2571370..2572023 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| GTW28_RS13355 (GTW28_13355) | yqbB | 2572064..2572981 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| GTW28_RS13360 (GTW28_13360) | yqbA | 2572978..2574510 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| GTW28_RS13365 (GTW28_13365) | stmB | 2574514..2575809 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| GTW28_RS13370 (GTW28_13370) | terS | 2575802..2576521 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| GTW28_RS13375 (GTW28_13375) | - | 2576589..2577053 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| GTW28_RS13380 (GTW28_13380) | yqaQ | 2577197..2577652 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| GTW28_RS13385 (GTW28_13385) | - | 2577850..2578779 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| GTW28_RS13390 (GTW28_13390) | yqaO | 2578853..2579059 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| GTW28_RS13395 (GTW28_13395) | yqaN | 2579141..2579569 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GTW28_RS13400 (GTW28_13400) | - | 2579665..2579814 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| GTW28_RS13405 (GTW28_13405) | sknM | 2579805..2580746 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| GTW28_RS13410 (GTW28_13410) | yqaL | 2580628..2581305 (-) | 678 | WP_116362964.1 | DnaD domain protein | - |
| GTW28_RS13415 (GTW28_13415) | recT | 2581381..2582235 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| GTW28_RS13420 (GTW28_13420) | yqaJ | 2582238..2583197 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| GTW28_RS13425 (GTW28_13425) | - | 2583303..2583497 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| GTW28_RS13430 (GTW28_13430) | - | 2583457..2583630 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| GTW28_RS13435 (GTW28_13435) | sknH | 2583627..2583884 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| GTW28_RS13440 (GTW28_13440) | yqaG | 2583881..2584450 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| GTW28_RS13445 (GTW28_13445) | - | 2584524..2584664 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| GTW28_RS13450 (GTW28_13450) | yqaF | 2584694..2584924 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| GTW28_RS13455 (GTW28_13455) | sknR | 2585101..2585451 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
| GTW28_RS13460 (GTW28_13460) | - | 2585718..2585885 (-) | 168 | WP_003229900.1 | hypothetical protein | - |
| GTW28_RS13465 (GTW28_13465) | yqaC | 2586241..2586777 (-) | 537 | WP_004399117.1 | AAA family ATPase | - |
| GTW28_RS13470 (GTW28_13470) | yqaB | 2587046..2587564 (+) | 519 | WP_015714342.1 | ImmA/IrrE family metallo-endopeptidase | - |
| GTW28_RS13475 (GTW28_13475) | - | 2587570..2587962 (+) | 393 | Protein_2625 | sigma-70 family RNA polymerase sigma factor | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=413695 GTW28_RS13135 WP_009967785.1 2538505..2538915(-) (nucA/comI) [Bacillus subtilis strain BJQ0005]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=413695 GTW28_RS13135 WP_009967785.1 2538505..2538915(-) (nucA/comI) [Bacillus subtilis strain BJQ0005]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |