Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GTW28_RS11340 Genome accession   NZ_CP047485
Coordinates   2224526..2225146 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain BJQ0005     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2219526..2230146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS11300 (GTW28_11300) ptsA 2220657..2221163 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  GTW28_RS11305 (GTW28_11305) ypqA 2221301..2221720 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  GTW28_RS11310 (GTW28_11310) sppG 2221741..2222118 (-) 378 WP_046381139.1 YppG family protein -
  GTW28_RS11315 (GTW28_11315) yppF 2222306..2222494 (+) 189 WP_003230690.1 YppF family protein -
  GTW28_RS11320 (GTW28_11320) yppE 2222533..2222904 (-) 372 WP_003246080.1 YppE family protein -
  GTW28_RS11325 (GTW28_11325) yppD 2222950..2223195 (-) 246 WP_004398488.1 YppD family protein -
  GTW28_RS11330 (GTW28_11330) sspM 2223394..2223498 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GTW28_RS11335 (GTW28_11335) yppC 2223523..2224485 (-) 963 WP_046381140.1 DUF2515 domain-containing protein -
  GTW28_RS11340 (GTW28_11340) recU 2224526..2225146 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GTW28_RS11345 (GTW28_11345) ponA 2225168..2227900 (+) 2733 WP_046381141.1 PBP1A family penicillin-binding protein -
  GTW28_RS11350 (GTW28_11350) ypoC 2227976..2228470 (-) 495 WP_029726783.1 YpoC family protein -
  GTW28_RS11355 (GTW28_11355) nth 2228467..2229126 (-) 660 WP_009967580.1 endonuclease III -
  GTW28_RS11360 (GTW28_11360) dnaD 2229145..2229843 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=413679 GTW28_RS11340 WP_004399067.1 2224526..2225146(+) (recU) [Bacillus subtilis strain BJQ0005]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=413679 GTW28_RS11340 WP_004399067.1 2224526..2225146(+) (recU) [Bacillus subtilis strain BJQ0005]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment