Detailed information NTG0413674

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I5102_RS07275
• Genome accession: NZ_CP060240
• Coordinates: 1556597..1557601 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain G-I-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1551597..1562601

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5102_RS07245 (I5102_001488)	fghA	1551689..1552540 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
I5102_RS07250 (I5102_001489)	ispF	1552611..1553084 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I5102_RS07255 (I5102_001490)	truD	1553081..1554148 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
I5102_RS07260 (I5102_001491)	surE	1554136..1554885 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
I5102_RS07265 (I5102_001492)	-	1554918..1555553 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
I5102_RS07270 (I5102_001493)	-	1555599..1556492 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
I5102_RS07275 (I5102_001494)	rpoS	1556597..1557601 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
I5102_RS07280 (I5102_001495)	fdxA	1558028..1558351 (-)	324	WP_003092272.1	ferredoxin FdxA	-
I5102_RS07285 (I5102_001496)	mutS	1558418..1560985 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
I5102_RS07290 (I5102_001498)	-	1561111..1562118 (-)	1008	WP_023085983.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=413674 I5102_RS07275 WP_003113871.1 1556597..1557601(+) (rpoS) [Pseudomonas aeruginosa strain G-I-1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=413674 I5102_RS07275 WP_003113871.1 1556597..1557601(+) (rpoS) [Pseudomonas aeruginosa strain G-I-1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653