Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GTW28_RS08035 Genome accession   NZ_CP047485
Coordinates   1508267..1508842 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain BJQ0005     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503267..1513842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS08005 (GTW28_08005) dapD 1503455..1504165 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GTW28_RS08010 (GTW28_08010) dapI 1504235..1505359 (+) 1125 WP_046380993.1 N-acetyldiaminopimelate deacetylase -
  GTW28_RS08015 (GTW28_08015) ykuS 1505421..1505666 (+) 246 WP_003232382.1 YkuS family protein -
  GTW28_RS08020 (GTW28_08020) mscT 1505703..1506506 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  GTW28_RS08025 (GTW28_08025) ahpA 1506743..1507285 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  GTW28_RS08030 (GTW28_08030) ykuV 1507355..1507801 (+) 447 WP_024571971.1 thiol-disulfide oxidoreductase YkuV -
  GTW28_RS08035 (GTW28_08035) rok 1508267..1508842 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  GTW28_RS08040 (GTW28_08040) cse15 1508883..1509848 (-) 966 WP_024571970.1 spore protein Cse15 -
  GTW28_RS08045 (GTW28_08045) mobA 1509985..1510584 (+) 600 WP_024571969.1 molybdenum cofactor guanylyltransferase -
  GTW28_RS08050 (GTW28_08050) moeB 1510635..1511654 (+) 1020 WP_032721477.1 molybdopterin-synthase adenylyltransferase MoeB -
  GTW28_RS08055 (GTW28_08055) glp 1511672..1512964 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  GTW28_RS08060 (GTW28_08060) mobB 1512925..1513446 (+) 522 WP_029725925.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=413673 GTW28_RS08035 WP_003232378.1 1508267..1508842(+) (rok) [Bacillus subtilis strain BJQ0005]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=413673 GTW28_RS08035 WP_003232378.1 1508267..1508842(+) (rok) [Bacillus subtilis strain BJQ0005]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment