Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GTW28_RS07935 Genome accession   NZ_CP047485
Coordinates   1492390..1492854 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain BJQ0005     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1487390..1497854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS07915 (GTW28_07915) kinA 1487857..1489677 (+) 1821 WP_046380991.1 sporulation histidine kinase KinA -
  GTW28_RS07920 (GTW28_07920) dapX 1489687..1490868 (-) 1182 WP_003232415.1 aminotransferase A -
  GTW28_RS07925 (GTW28_07925) - 1491070..1491231 (-) 162 WP_003245246.1 hypothetical protein -
  GTW28_RS07930 (GTW28_07930) cheV 1491435..1492346 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  GTW28_RS07935 (GTW28_07935) kre 1492390..1492854 (-) 465 WP_003232406.1 YkyB family protein Regulator
  GTW28_RS07940 (GTW28_07940) ykuC 1492980..1494272 (-) 1293 WP_046380992.1 MFS transporter -
  GTW28_RS07945 (GTW28_07945) ltdD 1494348..1494842 (-) 495 WP_072557193.1 L,D-transpeptidase family protein -
  GTW28_RS07950 (GTW28_07950) ppeE 1494899..1495759 (-) 861 WP_017697271.1 metallophosphoesterase -
  GTW28_RS07955 (GTW28_07955) fadH 1495902..1496666 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=413672 GTW28_RS07935 WP_003232406.1 1492390..1492854(-) (kre) [Bacillus subtilis strain BJQ0005]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=413672 GTW28_RS07935 WP_003232406.1 1492390..1492854(-) (kre) [Bacillus subtilis strain BJQ0005]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment