Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GTW28_RS04935 Genome accession   NZ_CP047485
Coordinates   941870..942664 (+) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain BJQ0005     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 936870..947664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS04905 (GTW28_04905) sxzA 937709..938740 (+) 1032 WP_003243057.1 iron ABC transporter permease -
  GTW28_RS04910 (GTW28_04910) yfhB 938855..939736 (+) 882 WP_046380867.1 PhzF family phenazine biosynthesis isomerase -
  GTW28_RS04915 (GTW28_04915) yfhC 939824..940408 (+) 585 WP_032723010.1 nitroreductase -
  GTW28_RS04920 (GTW28_04920) yfhD 940447..940638 (-) 192 WP_003233561.1 YfhD family protein -
  GTW28_RS04925 (GTW28_04925) yfhE 940705..940815 (-) 111 WP_003223230.1 YfhE family protein -
  GTW28_RS04930 (GTW28_04930) yfhF 940870..941781 (-) 912 WP_033883295.1 TIGR01777 family oxidoreductase -
  GTW28_RS04935 (GTW28_04935) recX 941870..942664 (+) 795 WP_029726844.1 recombination regulator RecX Regulator
  GTW28_RS04940 (GTW28_04940) yfhH 942666..942980 (+) 315 WP_003244592.1 YfhH family protein -
  GTW28_RS04945 (GTW28_04945) yfhI 943123..944316 (+) 1194 WP_003243500.1 MFS transporter -
  GTW28_RS04950 (GTW28_04950) sspK 944348..944500 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  GTW28_RS04955 (GTW28_04955) yfhJ 944625..944894 (+) 270 WP_015252516.1 YfhJ family protein -
  GTW28_RS04960 (GTW28_04960) yfhK 945039..945557 (+) 519 WP_029317456.1 SH3 domain-containing protein -
  GTW28_RS04965 (GTW28_04965) spdL 945642..945959 (+) 318 WP_038428649.1 SdpC immunity protein SpdL -
  GTW28_RS04970 (GTW28_04970) ephM 945961..946821 (+) 861 WP_014479220.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=413655 GTW28_RS04935 WP_029726844.1 941870..942664(+) (recX) [Bacillus subtilis strain BJQ0005]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=413655 GTW28_RS04935 WP_029726844.1 941870..942664(+) (recX) [Bacillus subtilis strain BJQ0005]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTTTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996

Multiple sequence alignment