Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GT360_RS20220 Genome accession   NZ_CP047476
Coordinates   1318336..1319445 (-) Length   369 a.a.
NCBI ID   WP_164650740.1    Uniprot ID   -
Organism   Vibrio astriarenae strain HN897     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1313336..1324445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS20210 (GT360_20230) yccS 1313508..1315721 (+) 2214 WP_239502657.1 YccS family putative transporter -
  GT360_RS20215 (GT360_20235) - 1315755..1318319 (-) 2565 WP_164650739.1 LuxQ periplasmic sensor domain-containing protein -
  GT360_RS20220 (GT360_20240) luxP 1318336..1319445 (-) 1110 WP_164650740.1 substrate-binding domain-containing protein Regulator
  GT360_RS20225 (GT360_20245) - 1319509..1319811 (-) 303 WP_164650741.1 GIY-YIG nuclease family protein -
  GT360_RS20230 (GT360_20250) - 1319804..1320439 (-) 636 WP_164650742.1 YceH family protein -
  GT360_RS20235 (GT360_20255) - 1320455..1320676 (-) 222 WP_239502658.1 hypothetical protein -
  GT360_RS20240 (GT360_20260) - 1320821..1321822 (-) 1002 WP_164650743.1 succinylglutamate desuccinylase/aspartoacylase family protein -
  GT360_RS20245 (GT360_20265) yfcC 1321887..1323362 (-) 1476 WP_239502702.1 putative basic amino acid antiporter YfcC -
  GT360_RS20250 (GT360_20270) - 1323742..1324059 (+) 318 WP_164650745.1 DUF496 family protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 42045.99 Da        Isoelectric Point: 4.7281

>NTDB_id=413636 GT360_RS20220 WP_164650740.1 1318336..1319445(-) (luxP) [Vibrio astriarenae strain HN897]
MRKYLTSAALSILAFGANADHHTLQVLSEYWQYDEFLDQFPAQRALTEKLNKTVQADASPLKTEQKKPISISVVYPGQQV
SDYWVRNISAFEQRMDELGIEYQINQVFTRPNVDLRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLSSGETKLILQ
NITTPLREWDELQPFMYVGFDHIKGTQLLVEHFKNVFPEGNSNYSVIYRSEGYVSEARGSTFINQMSHSGHYNLASSYYT
DASRESGYQTTLTILEQNRDIDFIYASATDVALGAVDALKEMGRTDVYINGWGGGTAELQALANDDLDVTVMRMNDDTGI
AMAEAIKWDIQGESVPTVYSGDFKLITSEADDNEIRYLKQKAFRYSNRD

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=413636 GT360_RS20220 WP_164650740.1 1318336..1319445(-) (luxP) [Vibrio astriarenae strain HN897]
ATGAGAAAGTACCTAACTTCAGCGGCGTTATCGATATTGGCATTTGGTGCAAATGCTGACCACCATACACTGCAAGTCCT
GAGTGAATACTGGCAGTATGATGAATTTTTAGATCAGTTTCCTGCCCAACGCGCTTTGACTGAAAAACTCAATAAAACAG
TACAAGCTGACGCATCACCTTTGAAAACTGAACAAAAAAAGCCGATTTCAATTTCGGTGGTTTATCCTGGCCAACAAGTA
TCAGATTATTGGGTGCGCAACATAAGCGCCTTTGAGCAGCGTATGGACGAGCTTGGGATCGAGTATCAGATAAATCAGGT
ATTTACTCGTCCTAATGTTGATCTAAGGCAGCAGAGTGTTTCTTTGATGGAGGCTCTTAAAAATAAGTCTGATTATCTCA
TTTTTACGTTAGATACCACTCGTCATCGTAAATTCATTGAGCATGTATTAAGCTCCGGAGAAACTAAGCTTATTCTTCAA
AACATCACTACTCCTTTAAGGGAGTGGGATGAACTTCAGCCATTTATGTATGTTGGCTTCGACCATATCAAAGGAACACA
GCTTTTGGTTGAACACTTCAAAAATGTCTTCCCTGAAGGAAATAGTAACTATTCGGTGATTTATCGCTCAGAGGGTTATG
TTAGTGAAGCAAGGGGCTCTACTTTCATCAACCAAATGTCACATAGCGGTCACTATAACCTAGCGTCCTCTTATTACACG
GATGCAAGCCGAGAATCGGGCTATCAAACTACACTCACCATACTGGAGCAAAATAGGGATATCGATTTTATTTATGCAAG
CGCAACAGATGTGGCTTTGGGAGCGGTAGATGCTTTGAAAGAAATGGGGCGCACTGATGTTTACATTAATGGTTGGGGGG
GAGGCACAGCGGAGCTTCAAGCCCTAGCGAATGATGACCTCGATGTAACAGTTATGCGAATGAATGACGATACAGGTATC
GCAATGGCTGAGGCTATTAAATGGGACATACAAGGAGAGTCTGTTCCAACGGTTTACTCTGGTGACTTTAAACTTATTAC
GTCGGAAGCGGACGACAATGAAATACGGTATTTGAAGCAAAAAGCTTTTCGTTATTCTAACCGTGATTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(71-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

65.789

92.683

0.61

Multiple sequence alignment