Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GT360_RS14175 Genome accession   NZ_CP047475
Coordinates   3048786..3049793 (-) Length   335 a.a.
NCBI ID   WP_164649472.1    Uniprot ID   A0A7Z2T5J2
Organism   Vibrio astriarenae strain HN897     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3043786..3054793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS14155 (GT360_14165) - 3045144..3045713 (-) 570 WP_164649468.1 outer membrane beta-barrel protein -
  GT360_RS14160 (GT360_14170) hslU 3045856..3047187 (-) 1332 WP_164649469.1 HslU--HslV peptidase ATPase subunit -
  GT360_RS14165 (GT360_14175) hslV 3047236..3047775 (-) 540 WP_164649470.1 ATP-dependent protease subunit HslV -
  GT360_RS14170 (GT360_14180) - 3048088..3048633 (-) 546 WP_164649471.1 SPOR domain-containing protein -
  GT360_RS14175 (GT360_14185) cytR 3048786..3049793 (-) 1008 WP_164649472.1 DNA-binding transcriptional regulator CytR Regulator
  GT360_RS14180 (GT360_14190) priA 3049952..3052147 (-) 2196 WP_164649473.1 primosomal protein N' -
  GT360_RS14185 (GT360_14195) rpmE 3052424..3052642 (+) 219 WP_164649474.1 50S ribosomal protein L31 -
  GT360_RS14190 (GT360_14200) - 3052910..3054193 (+) 1284 WP_164649475.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36927.35 Da        Isoelectric Point: 5.1334

>NTDB_id=413629 GT360_RS14175 WP_164649472.1 3048786..3049793(-) (cytR) [Vibrio astriarenae strain HN897]
MATMKDVALLAGVSTATVSRALMNPEKVSAATREKVEDAVMESGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGSDLPFDVSKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEAVNYLTQLGHKKVAEISGPGSSALCQFRHQGYQQALRRAGLEMKEEYVEHCEFTFEGGVKGVRKLLSNPEPPTA
IFCHCDTQAIGAIQEAKRLGFRVPQDLSVVGFDNIDFGLYCDPPLTTVAQPRYEIGRQTMLMMLEVLRGNDVRAGSRLLE
TELVIRDSAAPPRLI

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=413629 GT360_RS14175 WP_164649472.1 3048786..3049793(-) (cytR) [Vibrio astriarenae strain HN897]
ATGGCGACAATGAAGGATGTTGCTTTGTTGGCTGGCGTATCAACCGCCACCGTGTCCCGTGCTTTAATGAATCCAGAGAA
AGTATCAGCAGCTACGCGAGAGAAGGTAGAAGATGCCGTGATGGAGTCAGGCTATTCGCCAAACTCTCTAGCACGCAACC
TACGCCGCAATGAGTCTAAAACTATCGTCACGATAGTACCGGATATTTGCGACCCTTATTTCTCTGAGATTATTCGCGGT
ATTGAAGATGCGGCGATGGAGCACGGTTACCTAGTTTTACTTGGCGATAGCGGTCAGCAGAAAAAACGTGAGTCCTCTTT
TGTAAACTTGGTTTTCACTAAGCAAGCGGATGGTATGTTGTTGCTAGGTTCTGACTTACCCTTTGATGTGAGTAAATCAG
AGCAGAAGAACCTGCCACCAATGGTGATGGCGTGTGAGTATGCGCCAGAGCTAGAGTTGCCAACCGTTCACATTGATAAC
CTAACATCTGCGTTTGAAGCAGTGAACTACCTGACGCAACTGGGTCACAAGAAAGTGGCTGAGATCTCAGGTCCAGGCTC
ATCGGCTCTGTGTCAATTCCGCCACCAAGGCTATCAACAAGCCCTACGACGTGCCGGATTAGAGATGAAGGAAGAGTACG
TTGAACACTGCGAATTTACCTTTGAGGGTGGGGTTAAGGGTGTCCGCAAACTGCTATCAAACCCAGAGCCACCAACGGCG
ATCTTCTGCCACTGTGACACTCAAGCGATCGGTGCCATTCAAGAAGCGAAGCGTTTAGGTTTCCGTGTACCGCAAGATTT
GTCGGTGGTTGGTTTTGATAATATCGACTTTGGACTCTACTGTGATCCGCCGCTGACGACCGTTGCTCAACCGCGATACG
AAATTGGCCGTCAAACCATGCTCATGATGCTTGAAGTACTGCGTGGAAATGATGTTCGTGCCGGTTCACGTCTACTCGAA
ACTGAGCTTGTGATCCGAGATAGTGCTGCGCCACCAAGATTGATCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2T5J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

84.384

99.403

0.839
  cytR Vibrio cholerae C6706

84.337

99.104

0.836

Multiple sequence alignment