Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GT360_RS12205 Genome accession   NZ_CP047475
Coordinates   2633105..2633623 (-) Length   172 a.a.
NCBI ID   WP_164649143.1    Uniprot ID   A0A7Z2YEL2
Organism   Vibrio astriarenae strain HN897     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2628105..2638623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS12180 (GT360_12190) rimM 2628199..2628729 (-) 531 WP_164649139.1 ribosome maturation factor RimM -
  GT360_RS12185 (GT360_12195) rpsP 2628766..2629014 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  GT360_RS12190 (GT360_12200) ffh 2629234..2630625 (-) 1392 WP_164649140.1 signal recognition particle protein -
  GT360_RS12195 (GT360_12205) - 2630838..2631632 (+) 795 WP_164649141.1 cytochrome C assembly family protein -
  GT360_RS12200 (GT360_12210) - 2631714..2632994 (+) 1281 WP_164649142.1 HlyC/CorC family transporter -
  GT360_RS12205 (GT360_12215) luxS 2633105..2633623 (-) 519 WP_164649143.1 S-ribosylhomocysteine lyase Regulator
  GT360_RS12210 (GT360_12220) - 2633657..2634274 (-) 618 WP_164649144.1 hypothetical protein -
  GT360_RS12215 (GT360_12225) gshA 2634283..2635848 (-) 1566 WP_164649145.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18825.47 Da        Isoelectric Point: 4.5898

>NTDB_id=413620 GT360_RS12205 WP_164649143.1 2633105..2633623(-) (luxS) [Vibrio astriarenae strain HN897]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRDHLNGESVEIIDISP
MGCRTGFYMSLIGTPSESDVAAAWTASMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKAIATAILDAGISVNKNDELA
LPESMLQELKVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=413620 GT360_RS12205 WP_164649143.1 2633105..2633623(-) (luxS) [Vibrio astriarenae strain HN897]
ATGCCTTTACTAGATAGTTTTACCGTTGACCATACACGCATGAATGCACCAGCTGTTCGTGTTGCGAAAACCATGCAGAC
GCCAAAGGGCGATACCATTACCGTCTTTGATTTACGCTTTACAGCGCCAAACAAAGATATTCTTTCAGAGAAGGGTATCC
ACACACTAGAGCATCTTTACGCTGGCTTTATGCGTGACCATCTTAACGGTGAATCCGTAGAGATCATTGATATTTCACCA
ATGGGTTGTCGTACAGGCTTCTATATGAGCTTGATTGGTACGCCTTCAGAGTCTGATGTCGCTGCGGCTTGGACGGCTTC
AATGCAAGATGTATTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGCTGAATGAGTATCAATGTGGTACCGCTGCAATGC
ACTCTCTTGACGAAGCAAAAGCAATAGCGACAGCCATTTTGGATGCGGGTATTAGTGTGAATAAAAATGATGAGCTCGCT
CTGCCAGAGTCGATGCTACAAGAGCTAAAAGTGAACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2YEL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.628

100

0.866

Multiple sequence alignment