Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GT360_RS09205 Genome accession   NZ_CP047475
Coordinates   1953319..1953900 (-) Length   193 a.a.
NCBI ID   WP_164648577.1    Uniprot ID   A0A7Z2T3Q0
Organism   Vibrio astriarenae strain HN897     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1948319..1958900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS09185 (GT360_09190) - 1948658..1949914 (-) 1257 WP_164648573.1 DUF945 family protein -
  GT360_RS09190 (GT360_09195) - 1950099..1952039 (+) 1941 WP_164648574.1 ATP-binding protein -
  GT360_RS09195 (GT360_09200) - 1952036..1952533 (+) 498 WP_164648575.1 response regulator -
  GT360_RS09200 (GT360_09205) - 1952722..1953264 (+) 543 WP_164648576.1 hypothetical protein -
  GT360_RS09205 (GT360_09210) tfoX 1953319..1953900 (-) 582 WP_164648577.1 TfoX/Sxy family DNA transformation protein Regulator
  GT360_RS09210 (GT360_09215) - 1954405..1955325 (+) 921 WP_164648578.1 HDOD domain-containing protein -
  GT360_RS09215 (GT360_09220) - 1955356..1956261 (+) 906 WP_164648579.1 lysine exporter LysO family protein -
  GT360_RS09220 (GT360_09225) - 1956292..1956810 (+) 519 WP_164648580.1 hypothetical protein -
  GT360_RS09225 (GT360_09230) panP 1956917..1958578 (+) 1662 WP_164648581.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22105.54 Da        Isoelectric Point: 9.9727

>NTDB_id=413613 GT360_RS09205 WP_164648577.1 1953319..1953900(-) (tfoX) [Vibrio astriarenae strain HN897]
MTDQVFLDYVSNFGKFQQRAMFGGTGIFKQGAMFCQFISGRFYLRGGGKLDARLNALNCVKYRQVKRQCTATVNYYDVTA
LFIKGSEELNSLMRKSIALAVEQKNGRQLGTDLRIRDLPNMQLTIERMLRKSGIEDVDTFKDLGAHEVFEMVKGTYGNNV
DPKLLWKLAGAIEGVHWKVLKENKTFNQRVEHY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=413613 GT360_RS09205 WP_164648577.1 1953319..1953900(-) (tfoX) [Vibrio astriarenae strain HN897]
ATGACAGACCAAGTATTTTTAGATTACGTAAGCAACTTTGGAAAATTTCAACAACGAGCTATGTTTGGAGGTACAGGTAT
TTTCAAGCAAGGAGCCATGTTTTGCCAGTTTATCTCTGGTAGGTTTTATCTACGTGGAGGTGGAAAACTTGATGCACGCT
TAAACGCATTGAATTGTGTCAAATACCGTCAAGTAAAAAGGCAGTGTACTGCAACGGTAAACTATTATGATGTGACAGCT
TTGTTTATAAAGGGTAGTGAGGAGCTCAATAGTTTGATGAGGAAGTCAATAGCACTAGCGGTAGAGCAAAAAAATGGTCG
ACAATTGGGTACAGATCTTCGGATACGTGATCTCCCCAATATGCAGTTGACGATCGAGCGTATGTTGAGGAAATCGGGTA
TTGAAGATGTCGACACCTTCAAAGATTTGGGGGCTCACGAAGTGTTTGAGATGGTAAAAGGGACGTATGGTAATAATGTC
GATCCTAAATTGCTGTGGAAGCTCGCTGGTGCAATAGAGGGTGTTCACTGGAAAGTGCTAAAAGAAAATAAAACGTTCAA
CCAACGTGTTGAGCACTACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2T3Q0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

54.348

95.337

0.518
  tfoX Vibrio campbellii strain DS40M4

53.804

95.337

0.513
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

53.261

95.337

0.508
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

53.261

95.337

0.508
  tfoX Vibrio cholerae strain A1552

53.261

95.337

0.508
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

53.261

95.337

0.508
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

53.261

95.337

0.508
  tfoX Aliivibrio fischeri ES114

46.667

93.264

0.435

Multiple sequence alignment