Detailed information NTG0041354

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RTA_RS17140
• Genome accession: NC_015677
• Coordinates: 3569356..3570501 (+)
• Length: 381 a.a.
• NCBI ID: WP_081466311.1
• Uniprot ID: -
• Organism: Ramlibacter tataouinensis TTB310
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3564356..3575501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RTA_RS17115 (Rta_33470)	coaD	3564790..3565293 (-)	504	WP_013902691.1	pantetheine-phosphate adenylyltransferase	-
RTA_RS17120 (Rta_33480)	rsmD	3565342..3565977 (-)	636	WP_041675703.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RTA_RS17125 (Rta_33490)	-	3566083..3566280 (+)	198	WP_041675704.1	hypothetical protein	-
RTA_RS17130 (Rta_33500)	-	3566515..3567864 (-)	1350	WP_049871397.1	pitrilysin family protein	-
RTA_RS17135 (Rta_33510)	-	3567907..3569190 (-)	1284	WP_226986179.1	pitrilysin family protein	-
RTA_RS17140 (Rta_33520)	pilA	3569356..3570501 (+)	1146	WP_081466311.1	signal recognition particle-docking protein FtsY	Machinery gene
RTA_RS17150 (Rta_33530)	-	3570691..3571098 (+)	408	WP_013902697.1	type II toxin-antitoxin system VapC family toxin	-
RTA_RS17155 (Rta_33540)	phnE	3571127..3571960 (-)	834	WP_013902698.1	phosphonate ABC transporter, permease protein PhnE	-
RTA_RS17160 (Rta_33550)	-	3571968..3572807 (-)	840	WP_041675705.1	ABC transporter permease	-
RTA_RS17165 (Rta_33560)	-	3572814..3573650 (-)	837	WP_013902700.1	phosphonate ABC transporter ATP-binding protein	-
RTA_RS17170 (Rta_33570)	-	3573656..3574522 (-)	867	WP_013902701.1	putative selenate ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 39199.26 Da
• Isoelectric Point: 8.4627

>NTDB_id=41354 RTA_RS17140 WP_081466311.1 3569356..3570501(+) (pilA) [Ramlibacter tataouinensis TTB310]
MFSFFRKKPAATPAPAPIPPVAAPTPAPAPTPPAPIAEPAAPVVAAPEPAPAPAPARSGGLIGSALVQAMDIPVAAPVAP
ERQGWFGKLSSGLRKTGSNLSQVFTGGVIDEALYEELESALLLADAGVQATQTLLDAVRKKVASSGATRPVQAKNILAEA
LTQLLKPLEKPLVIGRHQPTVIMVAGVNGAGKTTSIGKLTKHLSSEGASVLLAAADTFRAAAREQLAIWADRNTVEIVSQ
EGGDPSAVSFDAVSAGRARGKDVVIVDTAGRLPTQLHLMEELRKIKRVVQKADASAPHEVLLVIDGNTGQNALTQVKAFD
AALGLTGLVITKLDGTAKGGVLAAIAQEKPVPVYFIGVGEKLEDLETFSAREFALALLGQG

Nucleotide

• Length: 1146 bp

>NTDB_id=41354 RTA_RS17140 WP_081466311.1 3569356..3570501(+) (pilA) [Ramlibacter tataouinensis TTB310]
ATGTTCAGTTTCTTCCGGAAAAAACCCGCGGCGACGCCGGCGCCCGCCCCCATCCCACCCGTCGCGGCGCCCACGCCCGC
GCCGGCTCCGACGCCTCCCGCCCCCATCGCCGAACCGGCCGCGCCAGTGGTGGCAGCGCCCGAACCCGCCCCTGCGCCGG
CCCCTGCCCGCAGCGGCGGCCTGATCGGCAGCGCCCTGGTGCAGGCCATGGACATCCCCGTGGCAGCGCCGGTGGCGCCG
GAGCGCCAGGGCTGGTTCGGCAAGCTCAGCAGCGGCTTGCGCAAGACCGGCAGCAACCTGTCGCAGGTGTTCACCGGCGG
CGTGATCGACGAGGCGCTGTACGAGGAGCTGGAGTCGGCCCTGCTGCTGGCCGACGCCGGGGTGCAGGCGACGCAAACCC
TGCTGGATGCCGTGCGCAAGAAGGTGGCGTCCAGCGGGGCCACGCGGCCGGTGCAGGCCAAGAACATCCTGGCCGAGGCG
CTGACGCAGCTGCTCAAGCCCCTGGAAAAGCCGCTGGTGATCGGCCGCCACCAGCCCACGGTGATCATGGTGGCCGGCGT
CAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTGACCAAGCATCTGTCCAGCGAGGGCGCCTCGGTGCTGCTGGCGG
CGGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGCGATCTGGGCCGACCGCAACACGGTGGAGATCGTCAGCCAG
GAAGGAGGCGATCCGTCGGCGGTGAGCTTCGACGCGGTGAGCGCCGGCCGCGCCCGCGGCAAGGACGTGGTGATCGTGGA
CACCGCGGGCCGCCTGCCCACGCAGCTGCACCTGATGGAGGAGCTGCGCAAGATCAAGCGCGTGGTGCAGAAGGCCGATG
CGAGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCCCTGACCCAGGTCAAGGCCTTCGAC
GCGGCGCTGGGGCTCACCGGCCTGGTCATCACCAAGCTGGACGGCACGGCCAAGGGCGGCGTGCTGGCAGCCATCGCGCA
GGAGAAGCCGGTGCCGGTGTATTTCATCGGCGTGGGCGAGAAGCTGGAGGACCTGGAGACGTTCAGCGCGCGGGAATTCG
CGCTGGCGCTGCTTGGGCAGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (179-378)

• SRP54-type protein, helical bundle domain (SRP54_N) (98-161)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.077	100	0.525