Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GTO87_RS01610 Genome accession   NZ_CP047418
Coordinates   342050..343429 (+) Length   459 a.a.
NCBI ID   WP_180849289.1    Uniprot ID   A0A7H9EJB3
Organism   Ligilactobacillus saerimneri strain 1A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 337050..348429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO87_RS01585 (GTO87_01580) - 337259..338623 (-) 1365 WP_180849284.1 hemolysin family protein -
  GTO87_RS01590 (GTO87_01585) - 338860..340200 (-) 1341 WP_180849285.1 aminopeptidase C -
  GTO87_RS01595 (GTO87_01590) rpiA 340355..341038 (-) 684 WP_180849286.1 ribose-5-phosphate isomerase RpiA -
  GTO87_RS01600 (GTO87_01595) - 341038..341337 (-) 300 WP_180849287.1 hypothetical protein -
  GTO87_RS01605 (GTO87_01600) - 341420..341956 (+) 537 WP_180849288.1 dUTP diphosphatase -
  GTO87_RS01610 (GTO87_01605) radA 342050..343429 (+) 1380 WP_180849289.1 DNA repair protein RadA Machinery gene
  GTO87_RS01615 (GTO87_01610) - 343462..344643 (+) 1182 WP_180849290.1 PIN/TRAM domain-containing protein -
  GTO87_RS01620 (GTO87_01615) gltX 344728..346218 (+) 1491 WP_180849685.1 glutamate--tRNA ligase -
  GTO87_RS01625 (GTO87_01620) cysS 346340..347761 (+) 1422 WP_180849291.1 cysteine--tRNA ligase -
  GTO87_RS01630 (GTO87_01625) - 347766..348158 (+) 393 WP_180849292.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49752.05 Da        Isoelectric Point: 7.1715

>NTDB_id=413424 GTO87_RS01610 WP_180849289.1 342050..343429(+) (radA) [Ligilactobacillus saerimneri strain 1A]
MAKVKTNYLCQECGYISPRYLGRCPNCNSWNTFVEQVEKPDTTSNSTASPRVNLRGTQVQPQLLDTVTTQKVPRVTTGMQ
ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLAYSQKKVLYVTGEESASQVKMRADRLGVGGNSFYIYPETDMAS
VKESIATTQPDFVVIDSVQTMQEPGMNSAVGSVAQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAGPKILEHMVDTVL
YFEGDQHRVFRMIRAVKNRFGSTNEVGVFEMREQGLAEVTNPSEVFLQERLADATGSAVVVSLEGTRPLLAEIQALVTPT
AFGNAQRTTTGLNRNRVALIMAVLEKRAGLLLQNQDAYLKTAGGLKLDEPAIDLALAISIASSYRDIATLPTDCFIGEIG
LTGEVRRVSQIEQRVNEAVKLGFRRVFVPQNNLDGWQFPDGIQVIGVKTVEQALKLAFK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=413424 GTO87_RS01610 WP_180849289.1 342050..343429(+) (radA) [Ligilactobacillus saerimneri strain 1A]
ATGGCAAAAGTTAAGACCAATTATTTGTGTCAGGAATGTGGATATATTTCACCGCGGTATCTGGGGCGGTGTCCTAATTG
CAATTCCTGGAATACCTTTGTTGAACAGGTGGAAAAGCCTGACACTACTTCCAACAGCACTGCTAGTCCGCGGGTGAATT
TGCGGGGAACCCAAGTTCAACCACAACTTCTTGATACAGTTACTACTCAGAAGGTTCCGCGCGTGACAACTGGGATGCAA
GAGTTAGACCGGGTATTAGGAGGCGGGATCGTTCCTGGGTCACTGATTTTAATTGGTGGGGATCCCGGGATCGGGAAATC
GACATTACTATTACAAGTATCAGGCCAGTTGGCTTACTCCCAAAAAAAGGTACTTTATGTTACTGGGGAAGAAAGTGCCA
GCCAAGTTAAAATGCGGGCTGACCGGTTAGGTGTCGGTGGAAATTCCTTCTATATTTATCCAGAAACTGATATGGCAAGT
GTTAAAGAAAGTATTGCTACAACACAGCCGGACTTTGTAGTGATCGACTCGGTACAAACCATGCAAGAACCAGGGATGAA
TTCTGCTGTGGGCAGTGTAGCCCAGATTCGCGAGGTAACTGGTGATTTAATGCAGATTGCTAAAACCAACGGGATCACTG
TTTTCGTAGTGGGACATGTTACTAAAGGCGGGGCAATTGCTGGTCCTAAAATTTTAGAACATATGGTTGATACAGTTTTG
TATTTTGAAGGCGATCAGCACCGAGTTTTCCGGATGATACGGGCTGTTAAGAATCGTTTCGGTTCAACTAATGAAGTTGG
GGTCTTTGAAATGCGGGAACAGGGGTTAGCAGAAGTTACTAACCCGTCAGAGGTCTTTTTACAAGAACGTTTGGCCGATG
CAACTGGTTCAGCAGTGGTGGTTTCTTTAGAAGGGACACGGCCACTTTTGGCTGAAATTCAGGCTTTAGTAACGCCGACT
GCTTTTGGTAATGCTCAACGTACAACTACTGGTCTCAATCGTAATCGGGTAGCGTTGATTATGGCAGTGCTTGAAAAAAG
AGCTGGTTTATTGTTGCAAAATCAAGATGCTTATTTGAAGACTGCCGGGGGATTAAAATTAGACGAACCAGCGATTGATC
TAGCATTAGCAATTAGTATTGCTTCAAGTTATCGAGATATCGCAACACTACCAACGGATTGTTTCATTGGTGAAATTGGA
TTAACTGGTGAAGTCCGTCGGGTTAGTCAGATTGAGCAACGGGTTAACGAGGCAGTCAAGCTAGGATTTCGGCGGGTATT
TGTTCCACAAAACAATCTTGATGGATGGCAGTTTCCTGATGGAATCCAAGTTATAGGAGTTAAGACGGTTGAGCAGGCCC
TGAAGTTAGCCTTTAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-224)

Subunit ChlI of Mg-chelatase (ChlI)

(365-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9EJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

63.319

99.782

0.632
  radA Streptococcus pneumoniae D39

63.319

99.782

0.632
  radA Streptococcus pneumoniae R6

63.319

99.782

0.632
  radA Streptococcus pneumoniae TIGR4

63.319

99.782

0.632
  radA Streptococcus mitis NCTC 12261

63.319

99.782

0.632
  radA Streptococcus mitis SK321

63.319

99.782

0.632
  radA Bacillus subtilis subsp. subtilis str. 168

60.699

99.782

0.606

Multiple sequence alignment