Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GTO84_RS06430 Genome accession   NZ_CP047412
Coordinates   1316921..1318738 (-) Length   605 a.a.
NCBI ID   WP_011475734.1    Uniprot ID   Q1WUX7
Organism   Ligilactobacillus salivarius strain 2D     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311921..1323738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO84_RS06405 (GTO84_06460) pstB 1312587..1313381 (-) 795 WP_003702915.1 phosphate ABC transporter ATP-binding protein PstB -
  GTO84_RS06410 (GTO84_06465) pstA 1313386..1314276 (-) 891 WP_180858082.1 phosphate ABC transporter permease PstA -
  GTO84_RS06415 (GTO84_06470) pstC 1314276..1315193 (-) 918 WP_003702917.1 phosphate ABC transporter permease subunit PstC -
  GTO84_RS06420 (GTO84_06475) - 1315204..1316058 (-) 855 WP_003701554.1 phosphate ABC transporter substrate-binding protein -
  GTO84_RS06425 (GTO84_06480) - 1316235..1316831 (+) 597 WP_162853479.1 ClpXP adapter SpxH family protein -
  GTO84_RS06430 (GTO84_06485) pepF 1316921..1318738 (-) 1818 WP_011475734.1 oligoendopeptidase F Regulator
  GTO84_RS06435 (GTO84_06490) - 1318836..1319735 (-) 900 WP_081511876.1 competence protein CoiA -
  GTO84_RS06440 (GTO84_06495) - 1319784..1320545 (-) 762 WP_180858084.1 adaptor protein MecA -
  GTO84_RS06445 (GTO84_06500) - 1320649..1322295 (-) 1647 WP_180858086.1 phosphoenolpyruvate carboxykinase (ATP) -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70587.73 Da        Isoelectric Point: 5.5454

>NTDB_id=413381 GTO84_RS06430 WP_011475734.1 1316921..1318738(-) (pepF) [Ligilactobacillus salivarius strain 2D]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQTVKDEVQNFRKLQGTMDQGSQRFLQIIENFLSINRKFEKVYV
YASMRNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNRKVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDEKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGNDVVSDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=413381 GTO84_RS06430 WP_011475734.1 1316921..1318738(-) (pepF) [Ligilactobacillus salivarius strain 2D]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAATACCAAACTGTAAAAGATGAGGTACAGAACTTCAGAAAATTACAAGGTACAA
TGGATCAAGGTAGTCAAAGATTTTTACAAATCATTGAAAATTTCTTAAGTATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAGAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAGCATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGAAAGTTAGAAAAGCTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAACAGAAGTCTATGATGTATTACTGGAACAAGTACACAAAAATCTTCCATTATTACATCGCTATGTAAAGC
TTAGAAAGAAAATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TATAATTATATTCAAGCGCAAATTGAAGCAAAAAAGGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGACGGATTATCTATTAAAGAATAACGATGAAAAAGAGATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTCAAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATATTATGGCAATGATGTAGTAAG
CGATCCTGAGATAGCTTTAGAGTGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCAGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAATAAATTAAACAAATATTTAACTTACTTAAAA
GCTGGTAGTAGTAAATATCCATTGGAAGTCATGAAAGATGCAGGTGTGGATATGACAGATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1WUX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.209

97.851

0.521

Multiple sequence alignment