Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GTO84_RS05595 Genome accession   NZ_CP047412
Coordinates   1176910..1178577 (-) Length   555 a.a.
NCBI ID   WP_081561327.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain 2D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1171910..1183577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO84_RS05565 (GTO84_05615) - 1172566..1174380 (-) 1815 WP_225442297.1 DUF2207 domain-containing protein -
  GTO84_RS05570 (GTO84_05620) - 1174484..1174783 (-) 300 WP_081561329.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  GTO84_RS05575 (GTO84_05625) yihA 1174801..1175391 (-) 591 WP_081561328.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GTO84_RS05580 (GTO84_05630) - 1175474..1175698 (-) 225 WP_003699860.1 YneF family protein -
  GTO84_RS05585 (GTO84_05635) - 1175825..1176079 (-) 255 WP_003704077.1 DUF896 domain-containing protein -
  GTO84_RS05590 (GTO84_05640) lexA 1176226..1176846 (+) 621 WP_003699857.1 transcriptional repressor LexA -
  GTO84_RS05595 (GTO84_05645) recN 1176910..1178577 (-) 1668 WP_081561327.1 DNA repair protein RecN Machinery gene
  GTO84_RS05600 (GTO84_05650) - 1178582..1179040 (-) 459 WP_003699854.1 arginine repressor -
  GTO84_RS05605 (GTO84_05655) - 1179065..1179892 (-) 828 WP_081509248.1 TlyA family RNA methyltransferase -
  GTO84_RS05610 (GTO84_05660) - 1179895..1180812 (-) 918 WP_180376181.1 polyprenyl synthetase family protein -
  GTO84_RS05615 (GTO84_05665) - 1180778..1181005 (-) 228 WP_081561326.1 exodeoxyribonuclease VII small subunit -
  GTO84_RS05620 (GTO84_05670) xseA 1181005..1182345 (-) 1341 WP_003699846.1 exodeoxyribonuclease VII large subunit -
  GTO84_RS05625 (GTO84_05675) folD 1182338..1183195 (-) 858 WP_011475808.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63352.10 Da        Isoelectric Point: 4.7891

>NTDB_id=413377 GTO84_RS05595 WP_081561327.1 1176910..1178577(-) (recN) [Ligilactobacillus salivarius strain 2D]
MLQELSIRDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRIQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEADLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNVMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=413377 GTO84_RS05595 WP_081561327.1 1176910..1178577(-) (recN) [Ligilactobacillus salivarius strain 2D]
ATGTTACAAGAATTATCAATAAGAGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAAACAGGTGCTGGTAAATCAATTATTATTGATGCCCTAGGTTTACTAGCAGGAGGTAGAGGTTCTACTGAAT
TCATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGTGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGACAGAATGAGC
ATCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAGTTAAGAATTCAA
TATCAAGTTGTGTATCAAAATTATCGTAAACTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAAAAGGCATGGGCTCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGATTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGTAATGAATGAATTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCTCAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGGACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.252

100

0.497

Multiple sequence alignment