Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   H5404_RS04085 Genome accession   NZ_CP060087
Coordinates   893277..894458 (-) Length   393 a.a.
NCBI ID   WP_140219468.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 888277..899458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS04070 (H5404_04070) - 889579..890127 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  H5404_RS04075 (H5404_04075) - 890214..890831 (-) 618 WP_005498603.1 HAD family hydrolase -
  H5404_RS04080 (H5404_04080) cqsS 891151..893199 (+) 2049 WP_024701329.1 response regulator Regulator
  H5404_RS04085 (H5404_04085) cqsA 893277..894458 (-) 1182 WP_140219468.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  H5404_RS04090 (H5404_04090) ylqF 894813..895757 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  H5404_RS04095 (H5404_04095) - 896047..896784 (-) 738 WP_005454086.1 EAL domain-containing protein -
  H5404_RS04100 (H5404_04100) - 896964..899204 (-) 2241 WP_153645229.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43768.11 Da        Isoelectric Point: 6.6123

>NTDB_id=413376 H5404_RS04085 WP_140219468.1 893277..894458(-) (cqsA) [Vibrio parahaemolyticus strain TJA114]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKSADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGKNKNLIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=413376 H5404_RS04085 WP_140219468.1 893277..894458(-) (cqsA) [Vibrio parahaemolyticus strain TJA114]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAACTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCTCCAAACCTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTACGTTTAGAAAAAACACTTGAGGTAATTAAATCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGTAAAAACAAGAACCTCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

59.173

98.473

0.583