Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   H5404_RS02170 Genome accession   NZ_CP060087
Coordinates   462143..462796 (-) Length   217 a.a.
NCBI ID   WP_024703103.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TJA114     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 457143..467796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5404_RS02160 (H5404_02160) - 457794..459377 (-) 1584 WP_005483978.1 BCCT family transporter -
  H5404_RS02165 (H5404_02165) - 459682..462090 (+) 2409 WP_140218971.1 beta-mannosidase -
  H5404_RS02170 (H5404_02170) qstR 462143..462796 (-) 654 WP_024703103.1 LuxR C-terminal-related transcriptional regulator Regulator
  H5404_RS02175 (H5404_02175) - 462796..463611 (-) 816 WP_005479824.1 helix-turn-helix domain-containing protein -
  H5404_RS02180 (H5404_02180) - 463677..464693 (-) 1017 WP_017447948.1 GGDEF domain-containing protein -
  H5404_RS02185 (H5404_02185) - 465065..465319 (-) 255 WP_011106259.1 hypothetical protein -
  H5404_RS02190 (H5404_02190) - 465505..467007 (-) 1503 WP_140218969.1 efflux transporter outer membrane subunit -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24617.16 Da        Isoelectric Point: 4.8085

>NTDB_id=413372 H5404_RS02170 WP_024703103.1 462143..462796(-) (qstR) [Vibrio parahaemolyticus strain TJA114]
MMNTNTTNNTVLLFTFNNIQGRGLQTAIEQNLEKPVLLTQGADVNFPSTRDEHYIAIVDSSLPELPEVKQTLSELEHVDA
TVLVNAEPNLRIESLLTWSNLKGLFYFEDDFDKVMMGLKGILNGENWLSRDILNQLIGHLLSLNNTVGELETKLEMELTR
REMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRNLL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=413372 H5404_RS02170 WP_024703103.1 462143..462796(-) (qstR) [Vibrio parahaemolyticus strain TJA114]
ATGATGAATACCAACACAACCAACAACACCGTCTTATTGTTCACCTTCAACAACATTCAAGGTCGCGGCTTGCAGACCGC
TATTGAACAGAACCTAGAAAAACCCGTACTTTTAACCCAAGGCGCTGACGTCAATTTCCCTAGCACCCGCGATGAACACT
ATATAGCGATAGTCGATAGTTCTCTCCCTGAATTGCCAGAGGTCAAACAAACTCTCAGTGAGTTAGAGCACGTAGATGCG
ACTGTATTGGTCAACGCAGAACCGAATCTGAGGATCGAGAGCTTACTCACTTGGTCAAACTTGAAAGGTTTGTTCTATTT
TGAGGATGATTTCGACAAGGTAATGATGGGGCTAAAAGGCATTTTGAACGGAGAGAATTGGCTCTCTCGCGATATTCTCA
ATCAACTGATTGGCCACCTATTGAGCCTAAACAATACCGTCGGTGAGCTAGAAACGAAACTCGAAATGGAACTGACCCGT
CGTGAGATGCAAGTGCTCTCTGCATTGTGTCAGGGTGGCTCAAACCTTGATATTGCCGATTCGCTCTTTGTCAGTGAGCA
CACGGTGAAATCGCACCTCTATAGTATTTTCCGTAAGCTCGAAGTCAAAAACCGCATGCAGGCCATTACGTGGGCAAAAC
GTAATTTGCTCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

40.271

100

0.41