Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GTO82_RS08675 Genome accession   NZ_CP047409
Coordinates   1771220..1773028 (+) Length   602 a.a.
NCBI ID   WP_180873214.1    Uniprot ID   A0A9X7Y6V6
Organism   Lactobacillus johnsonii strain 3DG     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1766220..1778028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO82_RS08650 (GTO82_08650) - 1766601..1767383 (-) 783 WP_117285877.1 threonine/serine exporter family protein -
  GTO82_RS08655 (GTO82_08655) - 1767400..1768947 (-) 1548 WP_180873212.1 ABC-F family ATP-binding cassette domain-containing protein -
  GTO82_RS08660 (GTO82_08660) - 1768947..1769330 (-) 384 WP_180873213.1 hypothetical protein -
  GTO82_RS08665 (GTO82_08665) - 1769555..1769827 (+) 273 WP_023599981.1 hypothetical protein -
  GTO82_RS08670 (GTO82_08670) - 1769932..1771056 (-) 1125 WP_086875188.1 LCP family protein -
  GTO82_RS08675 (GTO82_08675) pepF 1771220..1773028 (+) 1809 WP_180873214.1 oligoendopeptidase F Regulator
  GTO82_RS08680 (GTO82_08680) - 1773129..1773656 (+) 528 WP_180873215.1 helix-turn-helix domain-containing protein -
  GTO82_RS08690 (GTO82_08690) - 1774025..1775413 (+) 1389 WP_260983154.1 IS3 family transposase -
  GTO82_RS08695 (GTO82_08695) - 1775436..1776707 (-) 1272 WP_180873216.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68727.38 Da        Isoelectric Point: 4.5899

>NTDB_id=413339 GTO82_RS08675 WP_180873214.1 1771220..1773028(+) (pepF) [Lactobacillus johnsonii strain 3DG]
MAIPTRNEVSDDLKWDLSRVFKDDQEWEQEYNRVATEIKNLGRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNSFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTTVYDTLIKEVNSHLDLLHRYVSLRKKILGLFDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGDIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDEERTAYINFLKAGSSDY
PTEIMKHAGVDMTKADYLRDAFNTFEKRLNEFEKIVNELKTV

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=413339 GTO82_RS08675 WP_180873214.1 1771220..1773028(+) (pepF) [Lactobacillus johnsonii strain 3DG]
ATGGCTATTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGAACAAGAATATAATCGGGTCGCAACCGAAATTAAAAATTTAGGTAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAGGGGATTACAGAAATTTTATCTGTGAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAGATGAGCGCCGCTAT
CTCTTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAGACACTTGCTAAATTTATGCAAGATGAGCCCCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGCTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAATGTTCGCAAAA
ATTCATTTGATGTTATGTATGCAAGCTATGGTCAGTTTGAAAATAGTCTCGCTTCAACTCTATCAGGTGAAGTAAAGGCC
CACAATTTTAATGCTCAAGTACATAAATATAATTCTGCTCGAGAGGCTGCTTTAAGCGAAAATGGCGTACCAACTACTGT
TTACGATACATTGATCAAAGAAGTAAATAGTCACTTAGATCTCCTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTTTGACCTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCAAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAGGCTAGACGAGCCTTAGCTCCACTAGGAAAAGATTATTTAGAGCATGTTGACTATATCTTTAATAATCGTGT
AATTGATGTAGTTGAAAGCCAAAATAAGGTAACCGGTGCTTATTCTGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTCTATACCCTAGTTCATGAAACTGGACACTCAGTGCATTCCTGGTATACAAGA
AATACTCAGCCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAGATTACTGATCCTAAAACAAGAGCATTTGTTTTGAATCATTATCTTGATTCATTTAAGGGCA
CACTCTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCCGACGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTATGGTAATTTAAACCAAAGATATTATGGTGATAGTGTAGAACCAGGCGGAGATATTGCTAA
AGAATGGGCACGGATTCCTCACTTCTATTACAACTTCTATGTTTACCAATATGCAACAGGTTTTGCTGCTGCTACAGCCC
TTGCAAATAATGTTGTTCATGGTACTGACGAAGAACGTACGGCTTATATTAATTTCTTAAAGGCCGGCTCTTCAGATTAT
CCAACAGAAATAATGAAACATGCTGGTGTCGATATGACAAAGGCGGATTACTTAAGAGACGCATTTAATACTTTTGAAAA
ACGACTTAATGAGTTTGAAAAAATCGTTAATGAATTAAAAACAGTTTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

98.339

0.505

Multiple sequence alignment