Detailed information NTG0413290

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H5409_RS07285
• Genome accession: NZ_CP060086
• Coordinates: 1564434..1565438 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain JNQH-PA57
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1559434..1570438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H5409_RS07255 (H5409_07255)	fghA	1559526..1560377 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
H5409_RS07260 (H5409_07260)	ispF	1560448..1560921 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H5409_RS07265 (H5409_07265)	truD	1560918..1561985 (+)	1068	WP_029610725.1	tRNA pseudouridine(13) synthase TruD	-
H5409_RS07270 (H5409_07270)	surE	1561973..1562722 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
H5409_RS07275 (H5409_07275)	-	1562755..1563390 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H5409_RS07280 (H5409_07280)	-	1563436..1564329 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
H5409_RS07285 (H5409_07285)	rpoS	1564434..1565438 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
H5409_RS07290 (H5409_07290)	fdxA	1565865..1566188 (-)	324	WP_003092272.1	ferredoxin FdxA	-
H5409_RS07295 (H5409_07295)	mutS	1566255..1568822 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
H5409_RS07300 (H5409_07300)	-	1568948..1569955 (-)	1008	WP_121381622.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=413290 H5409_RS07285 WP_003113871.1 1564434..1565438(+) (rpoS) [Pseudomonas aeruginosa strain JNQH-PA57]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=413290 H5409_RS07285 WP_003113871.1 1564434..1565438(+) (rpoS) [Pseudomonas aeruginosa strain JNQH-PA57]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653