Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H5409_RS02590 Genome accession   NZ_CP060086
Coordinates   571255..571980 (-) Length   241 a.a.
NCBI ID   WP_121382017.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JNQH-PA57     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 566255..576980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5409_RS02565 (H5409_02565) - 566727..567242 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  H5409_RS02570 (H5409_02570) rarD 567932..568828 (-) 897 WP_003121788.1 EamA family transporter RarD -
  H5409_RS02575 (H5409_02575) - 569031..570005 (-) 975 WP_023095128.1 serine/threonine protein kinase -
  H5409_RS02580 (H5409_02580) - 570067..570825 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  H5409_RS02585 (H5409_02585) - 570893..571213 (-) 321 WP_004365177.1 YfiM family lipoprotein -
  H5409_RS02590 (H5409_02590) comF 571255..571980 (-) 726 WP_121382017.1 ComF family protein Machinery gene
  H5409_RS02595 (H5409_02595) - 572119..572412 (-) 294 WP_003084806.1 hypothetical protein -
  H5409_RS02600 (H5409_02600) - 572466..573392 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  H5409_RS02605 (H5409_02605) - 573510..574268 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  H5409_RS02610 (H5409_02610) - 574345..574593 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  H5409_RS02615 (H5409_02615) - 574604..575980 (+) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  H5409_RS02620 (H5409_02620) - 575982..576860 (+) 879 WP_121380102.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27030.47 Da        Isoelectric Point: 10.8076

>NTDB_id=413281 H5409_RS02590 WP_121382017.1 571255..571980(-) (comF) [Pseudomonas aeruginosa strain JNQH-PA57]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRTCAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSHLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=413281 H5409_RS02590 WP_121382017.1 571255..571980(-) (comF) [Pseudomonas aeruginosa strain JNQH-PA57]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCACCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCATCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.759

100

0.378
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361

Multiple sequence alignment