Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FHE72_RS14650 Genome accession   NZ_CP047394
Coordinates   2846182..2847891 (-) Length   569 a.a.
NCBI ID   WP_159362219.1    Uniprot ID   -
Organism   Rossellomorea vietnamensis strain 151-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2841182..2852891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE72_RS14625 (FHE72_14625) - 2842097..2842336 (+) 240 WP_034758056.1 DUF2627 domain-containing protein -
  FHE72_RS14630 (FHE72_14630) - 2842350..2843084 (-) 735 WP_159362217.1 glycerophosphodiester phosphodiesterase -
  FHE72_RS14635 (FHE72_14635) - 2843231..2843443 (-) 213 WP_079531702.1 hypothetical protein -
  FHE72_RS14640 (FHE72_14640) spo0A 2843683..2844462 (-) 780 WP_034758050.1 sporulation transcription factor Spo0A -
  FHE72_RS14645 (FHE72_14645) spoIVB 2844766..2846055 (-) 1290 WP_159362218.1 SpoIVB peptidase -
  FHE72_RS14650 (FHE72_14650) recN 2846182..2847891 (-) 1710 WP_159362219.1 DNA repair protein RecN Machinery gene
  FHE72_RS14655 (FHE72_14655) argR 2848002..2848451 (-) 450 WP_034760580.1 transcriptional regulator ArgR -
  FHE72_RS14660 (FHE72_14660) - 2848735..2849571 (-) 837 WP_159363278.1 TlyA family RNA methyltransferase -
  FHE72_RS14665 (FHE72_14665) dxs 2849574..2851466 (-) 1893 WP_159362220.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FHE72_RS14670 (FHE72_14670) - 2851488..2852120 (-) 633 WP_034758036.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64040.95 Da        Isoelectric Point: 5.1971

>NTDB_id=413258 FHE72_RS14650 WP_159362219.1 2846182..2847891(-) (recN) [Rossellomorea vietnamensis strain 151-6]
MLQELSIKNFAIIDSLSLSFEEGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEYVRHGEKKAEIEGLFILDNETHPCFQK
AADFGIEIEEGMIVLRRDISSTGKSVCRINGKLVTIAIMREVGASLIDIHGQHEHQELMNESLHLSLLDQFGGKDIASGL
SSYGQVYKEYLSIYKQLNRLNDNEQEMAHRLDLIQFQLKEIQDANLQLNEDEELQEEKRKLMNFEKLFEALQTSYDSIQG
ERKGMDWAGLAMSHLETAAEVDSQYAKTLESVSNAYYILEDAAHQVRGGLDMLEFEPNRLDLIEARLNEINGLKRKYGSS
VEEILAYSSKIEEEIETIMNKDSHVEQLQSKLHSLEKDLSLEAKNLSDTRKMWAKKLTASIHEQLKQLYMDKTKFEVRFV
KSGENESFSFHDFKKDGWDTVEFYISTNPGEPLKPLSKVASGGELSRIMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQ
AIAEKIYQVAVHSQVMCISHLPQVAAMADCHLFISKKMSGGRTSTMVKRLQEKDKIREISRMISGVEITDLTLEHAKELL
QLAGSIKET

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=413258 FHE72_RS14650 WP_159362219.1 2846182..2847891(-) (recN) [Rossellomorea vietnamensis strain 151-6]
TTGCTACAAGAACTATCAATCAAAAATTTCGCCATTATCGATTCCCTTTCCCTTTCGTTTGAAGAAGGATTGACTGTATT
ATCAGGTGAAACGGGCGCGGGTAAGTCGATCATCATCGATGCCATTCATTTACTGGTTGGCGGCAGAGGCTCCTCTGAGT
ATGTACGGCATGGGGAGAAGAAGGCTGAAATTGAAGGGTTATTTATTCTTGATAATGAAACACATCCCTGCTTTCAGAAA
GCGGCAGACTTCGGGATCGAGATCGAGGAAGGTATGATCGTCCTCAGAAGGGATATCTCGAGCACGGGGAAAAGTGTTTG
TAGAATTAATGGGAAGCTGGTGACGATCGCTATCATGAGGGAAGTCGGGGCATCCCTTATTGACATCCACGGGCAGCACG
AACATCAGGAACTCATGAATGAAAGCCTTCATCTTTCCTTATTGGACCAATTCGGAGGGAAGGATATTGCATCCGGATTA
TCCAGTTATGGACAAGTATACAAAGAGTATCTATCCATCTATAAGCAGCTGAACAGATTGAATGATAATGAACAGGAGAT
GGCTCATCGCCTGGATCTGATTCAATTTCAGCTGAAAGAGATTCAAGATGCGAATCTTCAGCTTAATGAAGATGAAGAGT
TGCAGGAAGAGAAGCGGAAACTGATGAACTTTGAAAAGCTATTCGAAGCGCTTCAAACCTCGTATGACAGCATACAAGGG
GAAAGAAAGGGGATGGACTGGGCAGGACTCGCCATGAGCCATCTTGAAACCGCTGCAGAAGTCGATTCTCAGTATGCAAA
GACGCTTGAATCCGTATCGAATGCGTATTATATCCTTGAAGATGCCGCCCATCAAGTCAGGGGTGGATTGGATATGCTTG
AATTCGAGCCGAATCGCCTGGACCTGATTGAGGCAAGATTGAATGAAATCAATGGTCTTAAGAGAAAATATGGATCATCG
GTAGAAGAGATTCTTGCCTATAGTTCTAAGATCGAAGAAGAAATCGAAACGATCATGAATAAGGATTCCCATGTTGAACA
ATTACAAAGTAAATTACATTCCCTTGAAAAAGATCTATCCCTCGAGGCGAAAAACCTATCCGATACTAGAAAAATGTGGG
CGAAGAAATTGACCGCCAGTATCCACGAACAGTTAAAGCAGCTGTATATGGATAAGACGAAATTCGAAGTCAGGTTTGTG
AAAAGCGGGGAAAACGAATCCTTTTCATTTCATGATTTCAAGAAGGATGGTTGGGATACGGTTGAGTTTTATATTTCCAC
AAATCCTGGAGAGCCGTTGAAGCCGTTATCGAAGGTCGCATCAGGTGGGGAACTGTCACGGATCATGCTTGCCCTTAAAA
CCATTTTTTCAAAACATCAAGGGATTACATCGATCATTTTTGATGAGGTTGATACAGGTGTGAGCGGAAGGGTCGCCCAG
GCCATTGCTGAAAAGATCTATCAGGTTGCCGTCCATTCACAAGTGATGTGCATCTCTCACTTGCCTCAGGTGGCAGCCAT
GGCCGATTGTCACTTGTTCATTTCGAAAAAAATGTCAGGAGGCAGGACGAGCACCATGGTGAAGCGTCTTCAGGAAAAAG
ATAAGATCAGGGAAATTTCACGTATGATTTCAGGAGTGGAAATAACCGATCTGACGCTTGAGCATGCAAAGGAATTACTG
CAACTGGCCGGTTCCATTAAAGAGACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.549

100

0.603

Multiple sequence alignment