Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FHE72_RS00600 Genome accession   NZ_CP047394
Coordinates   116114..117490 (+) Length   458 a.a.
NCBI ID   WP_061811073.1    Uniprot ID   -
Organism   Rossellomorea vietnamensis strain 151-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111114..122490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE72_RS00580 (FHE72_00580) - 111257..111718 (+) 462 WP_034766034.1 CtsR family transcriptional regulator -
  FHE72_RS00585 (FHE72_00585) - 111739..112287 (+) 549 WP_034766032.1 UvrB/UvrC motif-containing protein -
  FHE72_RS00590 (FHE72_00590) - 112284..113366 (+) 1083 WP_079534447.1 protein arginine kinase -
  FHE72_RS00595 (FHE72_00595) clpC 113368..115815 (+) 2448 WP_061811072.1 ATP-dependent protease ATP-binding subunit ClpC -
  FHE72_RS00600 (FHE72_00600) radA 116114..117490 (+) 1377 WP_061811073.1 DNA repair protein RadA Machinery gene
  FHE72_RS00605 (FHE72_00605) disA 117494..118566 (+) 1073 Protein_92 DNA integrity scanning diadenylate cyclase DisA -
  FHE72_RS00610 (FHE72_00610) - 118780..119871 (+) 1092 WP_060674161.1 PIN/TRAM domain-containing protein -
  FHE72_RS00615 (FHE72_00615) ispD 119952..120656 (+) 705 WP_159360925.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FHE72_RS00620 (FHE72_00620) ispF 120649..121125 (+) 477 WP_079534451.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50063.57 Da        Isoelectric Point: 7.0062

>NTDB_id=413237 FHE72_RS00600 WP_061811073.1 116114..117490(+) (radA) [Rossellomorea vietnamensis strain 151-6]
MAKKKTKFVCSSCGYESAKWMGKCPGCNEWNTMVEEVEMTGKKPRTSFMHSENTGPSKAEKLISIETKQEPRVLTESKEL
NRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSAQLADQKQKVLYISGEESIKQTKLRADRLHVKSDDLYIFAETNLELIH
QTIEQISPDFVIIDSIQTVFHPDVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHSYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALVTPTSF
NNPRRMATGIDHSRVSLIMAVLEKRAGMLLQQQDAYLKVAGGVKLDEPAIDLAVAASIASSFRDRASSAHDCIIGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRVIIPQNNLSGWQPPSDIEIKGVSNINEALSIILGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=413237 FHE72_RS00600 WP_061811073.1 116114..117490(+) (radA) [Rossellomorea vietnamensis strain 151-6]
TTGGCAAAGAAAAAGACTAAGTTTGTGTGTTCATCTTGTGGATATGAGTCTGCTAAGTGGATGGGGAAATGTCCGGGGTG
TAACGAGTGGAATACGATGGTGGAAGAGGTTGAAATGACAGGGAAGAAACCCCGGACGTCGTTTATGCACTCAGAAAATA
CCGGTCCATCTAAAGCAGAGAAGCTGATCTCCATTGAAACGAAGCAGGAGCCCAGGGTATTGACCGAGTCGAAAGAGTTG
AACCGGGTGCTTGGGGGAGGAGTAGTACCAGGGTCGCTGATATTGATTGGTGGAGACCCGGGGATCGGAAAATCCACTTT
ATTGCTGCAGGTTTCGGCCCAGCTTGCTGATCAAAAGCAGAAGGTTTTATACATCTCCGGGGAGGAGTCCATCAAGCAAA
CCAAGCTGCGGGCAGATCGACTGCATGTGAAATCAGATGATTTATATATATTTGCGGAAACAAATCTTGAGCTGATTCAT
CAAACGATTGAGCAAATCTCACCGGATTTCGTCATCATCGACTCGATTCAGACGGTCTTTCATCCTGACGTGACGTCTGC
TCCCGGAAGTGTCTCCCAGGTAAGGGAGTGTACGGCAGAACTGATGAGAATCGGGAAAACAAAGGGCATTGCCATCTTTA
TTGTAGGGCATGTTACCAAGGAAGGCTCGATTGCAGGACCTAGATTATTGGAGCACATGGTCGATACCGTACTGTATTTT
GAAGGGGAACGTCACCACTCCTATCGTATTTTAAGAGCGGTGAAGAACCGTTTCGGATCTACGAATGAGATGGGGATTTT
TGAAATGAAGGAATTGGGCCTTGAGGAAGTGGCCAATCCATCTGAGATATTCCTGGAAGAGCGCTCACAAGGTGCGGCGG
GTTCAACGGTCGTTGCCTCGATGGAAGGAACGAGGCCGGTTCTGGTGGAGATTCAAGCTCTTGTGACCCCAACCAGTTTT
AACAACCCCCGAAGGATGGCAACAGGGATTGATCATAGCCGGGTTTCACTGATCATGGCTGTGTTGGAAAAGCGGGCAGG
CATGCTTTTGCAGCAGCAGGATGCGTATCTGAAAGTGGCTGGCGGGGTGAAACTGGATGAACCGGCGATTGATTTGGCCG
TTGCTGCAAGTATCGCTTCCAGTTTTCGTGACAGGGCGTCCAGTGCCCATGATTGCATTATCGGTGAAGTCGGTTTAACA
GGTGAGATCAGAAGGGTATCAAGAATTGAGCAGCGCGTACAGGAAGCAGCCAAGTTAGGGTTTAAGAGAGTGATTATTCC
CCAGAATAACTTAAGCGGATGGCAGCCTCCTTCTGATATAGAGATCAAAGGGGTATCGAATATCAATGAAGCACTCTCAA
TTATCTTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.536

100

0.74
  radA Streptococcus mitis NCTC 12261

63.496

98.69

0.627
  radA Streptococcus mitis SK321

63.496

98.69

0.627
  radA Streptococcus pneumoniae Rx1

63.274

98.69

0.624
  radA Streptococcus pneumoniae D39

63.274

98.69

0.624
  radA Streptococcus pneumoniae R6

63.274

98.69

0.624
  radA Streptococcus pneumoniae TIGR4

63.274

98.69

0.624

Multiple sequence alignment