Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GS400_RS13100 Genome accession   NZ_CP047393
Coordinates   2531999..2533735 (-) Length   578 a.a.
NCBI ID   WP_160102462.1    Uniprot ID   A0A6P1HP47
Organism   Pontibacillus sp. HMF3514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2526999..2538735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS400_RS13080 (GS400_13080) - 2527176..2528528 (-) 1353 WP_160102454.1 aspartate kinase -
  GS400_RS13085 (GS400_13085) - 2528738..2529088 (+) 351 WP_160102456.1 DUF2680 domain-containing protein -
  GS400_RS13090 (GS400_13090) spo0A 2529180..2529971 (-) 792 WP_160102458.1 sporulation transcription factor Spo0A -
  GS400_RS13095 (GS400_13095) spoIVB 2530486..2531778 (-) 1293 WP_370519688.1 SpoIVB peptidase -
  GS400_RS13100 (GS400_13100) recN 2531999..2533735 (-) 1737 WP_160102462.1 DNA repair protein RecN Machinery gene
  GS400_RS13105 (GS400_13105) ahrC 2533764..2534213 (-) 450 WP_027448546.1 transcriptional regulator AhrC/ArgR -
  GS400_RS13110 (GS400_13110) - 2534331..2535143 (-) 813 WP_160102464.1 TlyA family RNA methyltransferase -
  GS400_RS13115 (GS400_13115) dxs 2535151..2537043 (-) 1893 WP_160102466.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GS400_RS13120 (GS400_13120) - 2537066..2537659 (-) 594 WP_160102468.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65453.50 Da        Isoelectric Point: 4.6453

>NTDB_id=413214 GS400_RS13100 WP_160102462.1 2531999..2533735(-) (recN) [Pontibacillus sp. HMF3514]
MLAELSIKDFAIIDEVSITFREGLTVLTGETGAGKSIIIDAIQLLAGGRGSAEFVRYGTKKAEIEGLFFIEDHQHKAYDK
AQLFGVDIAEDGMLVLNRTISSNGKSICRVNGKLVTLAILKEFGQSLIDIHTQHETQSLMDVERHIELLDLYDRNQIIPA
KDDYQDLYKEFESLKKRHKELSENEQEMAQRLDLLEFQYQELEQANLQPGEDERLTEERNRMANYEKIFKGLNDSYHALY
GEQKALDWLSHALSSLESAKDYDDDIATKVEELSNHYYLVEELAHSMRNQLDTMEYNEDELNSIESRLNEINRLKKKYGE
SVDDIIEYASRIEDEIDQIKNKDTHVAKLDQEIKGKAEDVALEAKHLHDLRVQASKSLTDSIHEELKDLYLDKAAFGVDF
QTTNGSETDPLIDGKHVKVGPKGYDIVKFMITTNPGEPLKDIHKVASGGELSRFMLALKRIFSKHQGVTSVIFDEVDTGV
SGRVAQAMAEKIYGISASSSQVLCISHLPQVAAMADTHLYIRKEVEDDRTKTIVDELSDEHKTEELARMISGAEMTDTTK
EHAKELLTLADNTKEQYA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=413214 GS400_RS13100 WP_160102462.1 2531999..2533735(-) (recN) [Pontibacillus sp. HMF3514]
GTGTTAGCTGAATTATCCATAAAGGATTTTGCAATTATTGATGAAGTGTCCATCACTTTTCGAGAAGGTTTAACAGTGCT
TACAGGTGAAACGGGAGCAGGTAAATCCATCATTATTGATGCGATTCAACTGTTGGCTGGCGGCAGAGGTTCAGCTGAAT
TTGTACGATATGGGACGAAAAAGGCTGAAATTGAAGGTTTGTTTTTTATAGAGGATCATCAACATAAAGCTTATGATAAA
GCGCAACTATTCGGTGTAGATATTGCTGAAGATGGGATGCTTGTTTTAAATCGTACAATAAGTTCCAATGGCAAAAGCAT
TTGTCGTGTAAATGGAAAATTGGTAACCCTTGCGATCCTAAAAGAATTTGGGCAATCATTAATTGATATACATACCCAAC
ATGAGACCCAATCCTTAATGGATGTCGAGCGTCACATTGAATTATTGGACTTATATGATCGAAATCAAATCATACCAGCT
AAAGATGACTATCAAGACTTATATAAAGAGTTCGAATCATTAAAAAAACGACATAAAGAATTAAGCGAAAACGAACAAGA
AATGGCTCAGCGATTGGACTTATTGGAGTTCCAATACCAAGAACTCGAACAAGCTAATCTCCAGCCCGGAGAAGACGAAC
GCTTAACAGAAGAACGAAATCGTATGGCGAACTACGAAAAGATCTTCAAAGGCTTAAATGACTCCTATCACGCTTTGTAT
GGTGAACAAAAAGCATTAGATTGGTTGTCACATGCTTTATCATCTCTTGAAAGTGCAAAGGATTATGATGATGACATTGC
CACTAAGGTTGAAGAACTCTCCAATCATTATTATCTTGTCGAAGAGCTCGCTCATTCTATGCGTAATCAGTTAGATACAA
TGGAATATAACGAAGATGAATTGAACTCCATTGAATCAAGGCTGAATGAAATCAATCGTTTGAAGAAAAAATATGGCGAA
AGCGTTGATGACATCATTGAATATGCTTCCCGTATTGAAGATGAAATTGATCAAATTAAAAATAAAGACACGCATGTAGC
CAAACTGGATCAAGAGATTAAGGGAAAAGCGGAGGATGTAGCATTAGAAGCTAAACACTTACATGATCTTCGCGTACAAG
CCTCTAAAAGCCTTACAGATTCTATTCATGAGGAATTAAAGGATCTCTATTTAGATAAAGCAGCTTTTGGTGTGGATTTT
CAAACAACAAATGGATCTGAAACGGATCCTTTAATTGACGGAAAACATGTCAAAGTTGGACCAAAAGGCTACGATATTGT
GAAATTTATGATTACGACCAATCCAGGTGAACCGTTAAAAGACATTCATAAAGTAGCAAGTGGTGGTGAGTTATCTCGCT
TCATGCTAGCTCTTAAACGGATCTTTTCTAAACACCAAGGTGTAACAAGTGTGATTTTTGATGAGGTCGATACAGGCGTC
AGCGGACGTGTTGCGCAAGCTATGGCTGAAAAAATATATGGAATTTCAGCTTCCTCATCTCAAGTACTCTGTATTTCGCA
TTTACCCCAAGTAGCAGCGATGGCAGATACACATCTTTATATACGTAAAGAAGTAGAAGATGACCGCACAAAAACAATTG
TCGATGAGCTGTCTGATGAACATAAAACAGAAGAACTAGCTCGTATGATTAGTGGTGCAGAAATGACAGACACTACAAAA
GAACACGCCAAAGAACTTTTAACTCTGGCGGATAATACCAAAGAACAATACGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1HP47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.382

99.654

0.552

Multiple sequence alignment