Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PJ20_RS11305 Genome accession   NZ_CP047386
Coordinates   2533944..2535317 (+) Length   457 a.a.
NCBI ID   WP_010803845.1    Uniprot ID   A0A5E4VRD3
Organism   Pandoraea fibrosis strain 7641     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2528944..2540317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ20_RS11285 (PJ20_011285) - 2529203..2530363 (+) 1161 WP_052240983.1 DUF1853 family protein -
  PJ20_RS11290 (PJ20_011290) thiD 2530393..2531217 (-) 825 WP_039374294.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PJ20_RS11295 (PJ20_011295) lplT 2531219..2532511 (-) 1293 WP_039374295.1 lysophospholipid transporter LplT -
  PJ20_RS11300 (PJ20_011300) alr 2532850..2533920 (+) 1071 WP_039374458.1 alanine racemase -
  PJ20_RS11305 (PJ20_011305) radA 2533944..2535317 (+) 1374 WP_010803845.1 DNA repair protein RadA Machinery gene
  PJ20_RS11310 (PJ20_011310) - 2535444..2537384 (-) 1941 WP_039374298.1 ATP-binding cassette domain-containing protein -
  PJ20_RS11315 (PJ20_011315) cls 2537558..2538985 (-) 1428 WP_039374300.1 cardiolipin synthase -
  PJ20_RS11320 (PJ20_011320) prmB 2539136..2540032 (-) 897 WP_039374302.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48127.33 Da        Isoelectric Point: 7.0801

>NTDB_id=413161 PJ20_RS11305 WP_010803845.1 2533944..2535317(+) (radA) [Pandoraea fibrosis strain 7641]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAETTTGHRYQSLAKSTPVLKLAHIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTVYSEALSSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKALPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEHAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=413161 PJ20_RS11305 WP_010803845.1 2533944..2535317(+) (radA) [Pandoraea fibrosis strain 7641]
ATGGCCAAAGCCAAGACTGTCTACATCTGTACCGAATGCGGCGGGCAAACCCCCAAGTGGGCGGGGCAGTGCCCCAACTG
CAACGGTTGGAACACGCTGGTCGAATCGGTGGCGGAGACGACGACCGGTCATCGCTATCAATCGCTCGCCAAGAGCACGC
CGGTGCTCAAGCTGGCGCATATCGAAGCGGCCGACGTGCCGCGCTTTTCCAGCGGCGTGAGCGAATTCGACCGCGTGCTG
GGGGGCGGTCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCTGCTTCAGTC
GCTTGCCCATCTCGCGCGTGAGCGTCGTGCGCTGTATGTCAGCGGCGAAGAGTCGGGGGCTCAGATTGCTTTGCGCGCGC
AACGCCTGGGCCTTGGCGCGGCGGGCGAGGGCGGGGGCGAACTGGATCTGCTCGCGGAAATCCAGTTGGAGAAGATTCTC
GGCGCCATCGAGTCGGAAAAGCCCGATGTCGTGGTGATCGATTCGATTCAGACGGTCTATTCCGAAGCGCTCAGCTCCGC
GCCCGGTTCCGTGGCGCAGGTGCGTGAATGTGCGGCGCAACTTACCCGTACCGCGAAGCAAAGTGGGGTGACCGTCATCA
TGGTCGGCCACGTCACGAAGGAAGGCAGCCTTGCCGGGCCGCGCGTGCTCGAGCACATTGTCGACACGGTGTTGTATTTC
GAAGGGGATACGCACTCGTCATACCGGTTGGTCCGGGCGTTCAAGAATCGCTTCGGTGCCGTCAACGAGTTGGGCGTGTT
TGCGATGACGGAGAAGGGGTTGCGCGGTGTGGCGAATCCGTCCGCGCTGTTCCTCTCGCAGCATGAACAGAGTGTGCCCG
GCTCCTGCGTGCTCGTGACTCAGGAGGGAACGCGACCGCTGCTCGTTGAGGTGCAGGCACTGGTCGATACGGCACAGGTG
CCCAATCCGCGGCGTCTGGCGGTGGGGTTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGTGATGCATCGCCATGCCGG
CATCGCGTGTTTCGATCAGGACGTGTTCCTGAATGCCGTTGGCGGTGTGAAGATCACGGAACCGGCGGCGGATCTGGCGG
TGTTGCTGGCGATTCACTCGTCGCTGCGCAACAAGGCGCTGCCACGCGGCATTGTCGCGTTCGGCGAAGTGGGACTGGCC
GGAGAAATTCGCCCGAGCCCCCGGGGGCAGGATCGTCTCAAGGAGGCCGCCAAGCTCGGCTTTTCCATCGCGATCATTCC
GAAGGCGAACGCGCCAAAGCAACCCATCGACGGACTGGAAGTCCACGCCGTCGATCGGTTGGAGCATGCAATTTCGGTGG
TCGCAGGGTTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4VRD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.854

100

0.488
  radA Streptococcus mitis SK321

48.252

93.873

0.453
  radA Streptococcus pneumoniae Rx1

48.252

93.873

0.453
  radA Streptococcus pneumoniae D39

48.252

93.873

0.453
  radA Streptococcus pneumoniae R6

48.252

93.873

0.453
  radA Streptococcus pneumoniae TIGR4

48.252

93.873

0.453
  radA Streptococcus mitis NCTC 12261

48.252

93.873

0.453

Multiple sequence alignment