Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PI93_RS16695 Genome accession   NZ_CP047385
Coordinates   3811965..3813338 (-) Length   457 a.a.
NCBI ID   WP_010803845.1    Uniprot ID   A0A5E4VRD3
Organism   Pandoraea fibrosis strain 6399     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3806965..3818338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PI93_RS16680 (PI93_016680) prmB 3807250..3808146 (+) 897 WP_039374302.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  PI93_RS16685 (PI93_016685) cls 3808297..3809724 (+) 1428 WP_039374300.1 cardiolipin synthase -
  PI93_RS16690 (PI93_016690) - 3809898..3811838 (+) 1941 WP_039374298.1 ATP-binding cassette domain-containing protein -
  PI93_RS16695 (PI93_016695) radA 3811965..3813338 (-) 1374 WP_010803845.1 DNA repair protein RadA Machinery gene
  PI93_RS16700 (PI93_016700) alr 3813362..3814432 (-) 1071 WP_039374458.1 alanine racemase -
  PI93_RS16705 (PI93_016705) lplT 3814771..3816063 (+) 1293 WP_039374295.1 lysophospholipid transporter LplT -
  PI93_RS16710 (PI93_016710) thiD 3816065..3816889 (+) 825 WP_039374294.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PI93_RS16715 (PI93_016715) - 3816919..3818079 (-) 1161 WP_052240983.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48127.33 Da        Isoelectric Point: 7.0801

>NTDB_id=413148 PI93_RS16695 WP_010803845.1 3811965..3813338(-) (radA) [Pandoraea fibrosis strain 6399]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAETTTGHRYQSLAKSTPVLKLAHIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTVYSEALSSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKALPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEHAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=413148 PI93_RS16695 WP_010803845.1 3811965..3813338(-) (radA) [Pandoraea fibrosis strain 6399]
ATGGCCAAAGCCAAGACTGTCTACATCTGTACCGAATGCGGCGGGCAAACCCCCAAGTGGGCGGGGCAGTGCCCCAACTG
CAACGGTTGGAACACGCTGGTCGAATCGGTGGCGGAGACGACGACCGGTCATCGCTATCAATCGCTCGCCAAGAGCACGC
CGGTGCTCAAGCTGGCGCATATCGAAGCGGCCGACGTGCCGCGCTTTTCCAGCGGCGTGAGCGAATTCGACCGCGTGCTG
GGGGGCGGTCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCTGCTTCAGTC
GCTTGCCCATCTCGCGCGTGAGCGTCGTGCGCTGTATGTCAGCGGCGAAGAGTCGGGGGCTCAGATTGCTTTGCGCGCGC
AACGCCTGGGCCTTGGCGCGGCGGGCGAGGGCGGGGGCGAACTGGATCTGCTCGCGGAAATCCAGTTGGAGAAGATTCTC
GGCGCCATCGAGTCGGAAAAGCCCGATGTCGTGGTGATCGATTCGATTCAGACGGTCTATTCCGAAGCGCTCAGCTCCGC
GCCCGGTTCCGTGGCGCAGGTGCGTGAATGTGCGGCGCAACTTACCCGTACCGCGAAGCAAAGTGGGGTGACCGTCATCA
TGGTCGGCCACGTCACGAAGGAAGGCAGCCTTGCCGGGCCGCGCGTGCTCGAGCACATTGTCGACACGGTGTTGTATTTC
GAAGGGGATACGCACTCGTCATACCGGTTGGTCCGGGCGTTCAAGAATCGCTTCGGTGCCGTCAACGAGTTGGGCGTGTT
TGCGATGACGGAGAAGGGGTTGCGCGGTGTGGCGAATCCGTCCGCGCTGTTCCTCTCGCAGCATGAACAGAGTGTGCCCG
GCTCCTGCGTGCTCGTGACTCAGGAGGGAACGCGACCGCTGCTCGTTGAGGTGCAGGCACTGGTCGATACGGCACAGGTG
CCCAATCCGCGGCGTCTGGCGGTGGGGTTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGTGATGCATCGCCATGCCGG
CATCGCGTGTTTCGATCAGGACGTGTTCCTGAATGCCGTTGGCGGTGTGAAGATCACGGAACCGGCGGCGGATCTGGCGG
TGTTGCTGGCGATTCACTCGTCGCTGCGCAACAAGGCGCTGCCACGCGGCATTGTCGCGTTCGGCGAAGTGGGACTGGCC
GGAGAAATTCGCCCGAGCCCCCGGGGGCAGGATCGTCTCAAGGAGGCCGCCAAGCTCGGCTTTTCCATCGCGATCATTCC
GAAGGCGAACGCGCCAAAGCAACCCATCGACGGACTGGAAGTCCACGCCGTCGATCGGTTGGAGCATGCAATTTCGGTGG
TCGCAGGGTTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4VRD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.854

100

0.488
  radA Streptococcus mitis SK321

48.252

93.873

0.453
  radA Streptococcus pneumoniae Rx1

48.252

93.873

0.453
  radA Streptococcus pneumoniae D39

48.252

93.873

0.453
  radA Streptococcus pneumoniae R6

48.252

93.873

0.453
  radA Streptococcus pneumoniae TIGR4

48.252

93.873

0.453
  radA Streptococcus mitis NCTC 12261

48.252

93.873

0.453

Multiple sequence alignment