Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H4P47_RS09075 Genome accession   NZ_CP060075
Coordinates   1899732..1901159 (-) Length   475 a.a.
NCBI ID   WP_077776926.1    Uniprot ID   -
Organism   Escherichia coli strain G3/10     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894732..1906159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4P47_RS09045 (H4P47_09045) yeeZ 1894787..1895611 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  H4P47_RS09050 (H4P47_09050) yeeY 1895657..1896586 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H4P47_RS09055 (H4P47_09055) yoeI 1896801..1896863 (+) 63 WP_010723108.1 membrane protein YoeI -
  H4P47_RS09060 (H4P47_09060) plaP 1896853..1898211 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H4P47_RS09065 (H4P47_09065) tsuA 1898390..1899448 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  H4P47_RS09070 (H4P47_09070) tsuB 1899462..1899689 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H4P47_RS09075 (H4P47_09075) sbcB 1899732..1901159 (-) 1428 WP_077776926.1 exodeoxyribonuclease I Machinery gene
  H4P47_RS09080 (H4P47_09080) dacD 1901368..1902534 (+) 1167 WP_016247321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H4P47_RS09085 (H4P47_09085) sbmC 1902653..1903126 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  H4P47_RS09090 (H4P47_09090) yeeA 1903325..1904383 (+) 1059 WP_001200891.1 FUSC family protein -
  H4P47_RS09095 (H4P47_09095) tmaR 1904555..1904884 (+) 330 WP_000450409.1 DUF496 family protein -
  H4P47_RS09100 (H4P47_09100) - 1904985..1905176 (-) 192 Protein_1812 EutP/PduV family microcompartment system protein -
  H4P47_RS09105 (H4P47_09105) cobU 1905343..1905888 (+) 546 WP_000973155.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54474.74 Da        Isoelectric Point: 5.6070

>NTDB_id=413137 H4P47_RS09075 WP_077776926.1 1899732..1901159(-) (sbcB) [Escherichia coli strain G3/10]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLSQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=413137 H4P47_RS09075 WP_077776926.1 1899732..1901159(-) (sbcB) [Escherichia coli strain G3/10]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGTCCCAGCCTGGCGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577