Detailed information NTG0413124

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H4P47_RS05515
• Genome accession: NZ_CP060075
• Coordinates: 1135153..1136145 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain G3/10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1130153..1141145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4P47_RS05485 (H4P47_05485)	ispD	1130214..1130924 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H4P47_RS05490 (H4P47_05490)	ispF	1130924..1131403 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H4P47_RS05495 (H4P47_05495)	truD	1131400..1132449 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H4P47_RS05500 (H4P47_05500)	surE	1132430..1133191 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H4P47_RS05505 (H4P47_05505)	pcm	1133185..1133811 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H4P47_RS05510 (H4P47_05510)	nlpD	1133996..1135090 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H4P47_RS05515 (H4P47_05515)	rpoS	1135153..1136145 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H4P47_RS05520 (H4P47_05520)	ygbN	1136239..1137603 (-)	1365	WP_000104429.1	GntP family transporter	-
H4P47_RS05525 (H4P47_05525)	ygbM	1137692..1138468 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
H4P47_RS05530 (H4P47_05530)	ygbL	1138473..1139111 (-)	639	WP_001278994.1	aldolase	-
H4P47_RS05535 (H4P47_05535)	otnK	1139108..1140370 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=413124 H4P47_RS05515 WP_000081550.1 1135153..1136145(+) (rpoS) [Escherichia coli strain G3/10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=413124 H4P47_RS05515 WP_000081550.1 1135153..1136145(+) (rpoS) [Escherichia coli strain G3/10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715