Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GSN03_RS20625 Genome accession   NZ_CP047366
Coordinates   4020201..4020947 (-) Length   248 a.a.
NCBI ID   WP_000487006.1    Uniprot ID   A0A2C1PEK7
Organism   Bacillus nitratireducens strain BM02     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4015201..4025947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS20610 (GSN03_20445) dnaG 4015958..4017754 (-) 1797 WP_000528227.1 DNA primase -
  GSN03_RS20615 (GSN03_20450) - 4018620..4019432 (-) 813 WP_000368933.1 pyruvate, water dikinase regulatory protein -
  GSN03_RS20620 (GSN03_20455) - 4019462..4020094 (-) 633 WP_002077328.1 helix-turn-helix transcriptional regulator -
  GSN03_RS20625 (GSN03_20460) recO 4020201..4020947 (-) 747 WP_000487006.1 DNA repair protein RecO Machinery gene
  GSN03_RS20630 (GSN03_20465) - 4020981..4021124 (-) 144 WP_000883924.1 YqzL family protein -
  GSN03_RS20635 (GSN03_20470) era 4021297..4022202 (-) 906 WP_001080239.1 GTPase Era -
  GSN03_RS20640 (GSN03_20475) - 4022195..4022593 (-) 399 WP_001086292.1 cytidine deaminase -
  GSN03_RS20645 (GSN03_20480) - 4022693..4023046 (-) 354 WP_000715486.1 diacylglycerol kinase family protein -
  GSN03_RS20650 (GSN03_20485) ybeY 4023043..4023513 (-) 471 WP_016130260.1 rRNA maturation RNase YbeY -
  GSN03_RS20655 (GSN03_20490) - 4023510..4025654 (-) 2145 WP_000091502.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28614.12 Da        Isoelectric Point: 8.0488

>NTDB_id=413048 GSN03_RS20625 WP_000487006.1 4020201..4020947(-) (recO) [Bacillus nitratireducens strain BM02]
MFQKVEGIVIRTTDYGETNKIVTIFSREFGKVSAMARGAKKPKSRLAAVSQLMTHGHFLIQIGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKKNNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=413048 GSN03_RS20625 WP_000487006.1 4020201..4020947(-) (recO) [Bacillus nitratireducens strain BM02]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAGAGTCGGTTAGCAGCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATAGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGTGAGGATATATTTTTAACTGCTTATGCATCATTTATTATTGAATTAACTGATAAAGCAACAGAAGATAAGAAGAA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCTGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCAGAGCAAGATCAGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTCGATCTACACCGGCTCGGTAATGTATCGGTGAAGGACAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGATGAATATTGTGGGATTTATTTGAAATCAAGGCGTTTCTTA
GAACAACTTGATAAATTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C1PEK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.87

99.597

0.556

Multiple sequence alignment