Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GSN03_RS19080 Genome accession   NZ_CP047366
Coordinates   3751241..3751699 (+) Length   152 a.a.
NCBI ID   WP_000804854.1    Uniprot ID   A0A2B8TGS8
Organism   Bacillus nitratireducens strain BM02     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746241..3756699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS19065 (GSN03_18900) - 3746904..3747140 (+) 237 WP_000283735.1 hypothetical protein -
  GSN03_RS19070 (GSN03_18905) - 3747308..3749416 (-) 2109 WP_000421689.1 polyphosphate kinase -
  GSN03_RS19075 (GSN03_18910) ppx 3749525..3751099 (-) 1575 WP_050552486.1 exopolyphosphatase -
  GSN03_RS19080 (GSN03_18915) kre 3751241..3751699 (+) 459 WP_000804854.1 YkyB family protein Regulator
  GSN03_RS19085 (GSN03_18920) - 3751731..3752393 (-) 663 WP_044737689.1 YkyA family protein -
  GSN03_RS19090 (GSN03_18925) - 3752946..3753599 (-) 654 WP_000875437.1 diguanylate cyclase domain-containing protein -
  GSN03_RS19095 (GSN03_18930) - 3753764..3753997 (+) 234 WP_000939454.1 SPP1 phage holin family protein -
  GSN03_RS19100 (GSN03_18935) - 3754029..3754529 (-) 501 WP_000708186.1 hypothetical protein -
  GSN03_RS19105 (GSN03_18940) - 3755145..3756686 (+) 1542 WP_000388063.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17784.47 Da        Isoelectric Point: 10.6793

>NTDB_id=413043 GSN03_RS19080 WP_000804854.1 3751241..3751699(+) (kre) [Bacillus nitratireducens strain BM02]
MKPSQPQSQLHNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGHLESSYRNPKTTLSLTIAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=413043 GSN03_RS19080 WP_000804854.1 3751241..3751699(+) (kre) [Bacillus nitratireducens strain BM02]
ATGAAACCTTCACAACCACAATCTCAATTACATAACCAACATTCTATTAATAGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCTAAGTACTTATACTGGTTAAAAAAGACTGCTTTAGAACGCTTAATTACTGAAA
AGAAGGCTATCAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGTCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATCCCTCCTACGAAAGATGATTTTCGCACCCTACCGCATCTTGGTCACCTTGAATCCTCCTA
CCGAAATCCGAAAACAACCTTATCTTTAACAATAGCAAAAAAAACACTGCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGCGAACCAGTTCCATGGTATAGCCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B8TGS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment