Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GSN03_RS09870 Genome accession   NZ_CP047366
Coordinates   1933241..1933528 (+) Length   95 a.a.
NCBI ID   WP_000648281.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1928241..1938528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS09850 (GSN03_09750) - 1929419..1929616 (+) 198 WP_001048107.1 DUF4083 domain-containing protein -
  GSN03_RS09855 (GSN03_09755) - 1929647..1930108 (+) 462 WP_000035008.1 NUDIX hydrolase -
  GSN03_RS09860 (GSN03_09760) nadE 1930150..1930968 (-) 819 WP_098588860.1 ammonia-dependent NAD(+) synthetase -
  GSN03_RS09865 (GSN03_09765) - 1931241..1933121 (+) 1881 WP_212090385.1 ABC transporter permease -
  GSN03_RS09870 (GSN03_09770) abrB 1933241..1933528 (+) 288 WP_000648281.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GSN03_RS09875 (GSN03_09775) - 1933816..1934766 (+) 951 WP_212090387.1 serine protease -
  GSN03_RS09880 (GSN03_09780) - 1934807..1935115 (-) 309 WP_098588856.1 ArsR/SmtB family transcription factor -
  GSN03_RS09885 (GSN03_09785) - 1935224..1936159 (+) 936 WP_212090389.1 aldo/keto reductase -
  GSN03_RS09890 (GSN03_09790) - 1936209..1937384 (+) 1176 WP_212090392.1 MFS transporter -
  GSN03_RS09895 (GSN03_09795) - 1937569..1937793 (-) 225 WP_000162605.1 hypothetical protein -
  GSN03_RS09900 (GSN03_09800) - 1937878..1938225 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10662.43 Da        Isoelectric Point: 5.8623

>NTDB_id=413034 GSN03_RS09870 WP_000648281.1 1933241..1933528(+) (abrB) [Bacillus nitratireducens strain BM02]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=413034 GSN03_RS09870 WP_000648281.1 1933241..1933528(+) (abrB) [Bacillus nitratireducens strain BM02]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAAAAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

95.789

0.547

Multiple sequence alignment